BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0366800 Os03g0366800|Os03g0366800
         (499 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G19930.1  | chr4:10803558-10804853 FORWARD LENGTH=432           52   9e-07
AT1G13200.1  | chr1:4507221-4508528 REVERSE LENGTH=436             50   2e-06

>AT4G19930.1 | chr4:10803558-10804853 FORWARD LENGTH=432
          Length = 431

 Score = 51.6 bits (122), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 79/194 (40%), Gaps = 29/194 (14%)

Query: 71  MPDEMVLELLARLPVKSLLRLRAVSRPWRAAICAPSFVXXXXXXXXXXXXWEPTLLIAPQ 130
           +P ++V+E+L RLP KSL+R ++VS+ W + IC+ +F                 LL  P 
Sbjct: 43  IPFDLVIEILTRLPAKSLMRFKSVSKLWSSLICSRTFTNR--------------LLRVPS 88

Query: 131 LLDDAERDIIWLTNFSDTIRLYQWRRRRNGQTEEEQVGAGAS--ASLIFRRSFHGEFRSV 188
            +   +R  + LT   +++     +R+    +     G+  S  +S +  R         
Sbjct: 89  FI---QRLYVTLTFLDNSL-----QRKSKLLSSSSSPGSDISTMSSFVVDRDLTTPSMKG 140

Query: 189 FQLSHC-NGLMLVPTDTTSYVVNPATRSAIALPESXXXXXXXALPQATG----FGHDPHT 243
           + LSH   GLM    + +  + N  TR  + LP+           +        GHDP  
Sbjct: 141 YYLSHVLRGLMCFVKEPSVKIYNTTTRQLVVLPDIEESNIIAEDHKNKKIMYRIGHDPVG 200

Query: 244 GTYKVARCFVRSGD 257
             YKV     R  D
Sbjct: 201 DQYKVVCIVARPND 214



>AT1G13200.1 | chr1:4507221-4508528 REVERSE LENGTH=436
          Length = 435

 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 74/161 (45%), Gaps = 31/161 (19%)

Query: 69  GEMPDEMVLELLARLPVKSLLRLRAVSRPWRAAICAPSFVXXXXXXXXXXXXWEPTLLIA 128
             +P++++ E+  R PVK+L+RL+++S+ WR+ I + SF              E  L IA
Sbjct: 41  SSLPNDVLEEIFLRFPVKALIRLKSLSKQWRSTIESRSFE-------------ERHLTIA 87

Query: 129 PQLLDDAERDIIWLTNFSDTIRLYQWRRRRNGQTEEEQVG----AGASASLI--FRRSF- 181
            +   D  +  + L    D I       R  G   +  +G       SASL+   R +F 
Sbjct: 88  KKAFVDHPK--VMLVGEEDPI-------RGTGIRPDTDIGFRLFCLESASLLSFTRLNFP 138

Query: 182 HGEFRSVFQLSHCNGLMLV--PTDTTSYVVNPATRSAIALP 220
            G F  ++    C+GL  +  P   + YVVNPATR    LP
Sbjct: 139 QGFFNWIYISESCDGLFCIHSPKSHSVYVVNPATRWLRLLP 179



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.134    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 10,305,364
Number of extensions: 402311
Number of successful extensions: 1346
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1348
Number of HSP's successfully gapped: 2
Length of query: 499
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 396
Effective length of database: 8,282,721
Effective search space: 3279957516
Effective search space used: 3279957516
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 114 (48.5 bits)