BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0359100 Os03g0359100|AK073091
         (106 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G27410.1  | chr5:9678821-9682468 FORWARD LENGTH=560            102   4e-23
AT3G05190.1  | chr3:1471457-1475067 FORWARD LENGTH=556             96   5e-21

>AT5G27410.1 | chr5:9678821-9682468 FORWARD LENGTH=560
          Length = 559

 Score =  102 bits (254), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 46/54 (85%), Positives = 51/54 (94%)

Query: 14 VIHAWSAPRSLSTSLMYSFAQRDDMEVLDEPLYANFLRVTGVDRPYREELLSNM 67
          VIHAWSAPRSLST+LMYSFAQRDD+EVLDEPLYA FL+ TGVDRPY++ELLS M
Sbjct: 3  VIHAWSAPRSLSTTLMYSFAQRDDIEVLDEPLYAAFLKSTGVDRPYKDELLSKM 56



>AT3G05190.1 | chr3:1471457-1475067 FORWARD LENGTH=556
          Length = 555

 Score = 95.5 bits (236), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 43/54 (79%), Positives = 49/54 (90%)

Query: 14 VIHAWSAPRSLSTSLMYSFAQRDDMEVLDEPLYANFLRVTGVDRPYREELLSNM 67
          VIH+WSAPRSLSTSLMYSFAQR D EV+DEPLYA+FL+ TG DRPYR+E+LS M
Sbjct: 6  VIHSWSAPRSLSTSLMYSFAQRLDTEVVDEPLYASFLKATGFDRPYRDEVLSKM 59



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.324    0.135    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,543,499
Number of extensions: 45736
Number of successful extensions: 125
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 125
Number of HSP's successfully gapped: 2
Length of query: 106
Length of database: 11,106,569
Length adjustment: 75
Effective length of query: 31
Effective length of database: 9,050,369
Effective search space: 280561439
Effective search space used: 280561439
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 105 (45.1 bits)