BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0358000 Os03g0358000|Os03g0358000
(78 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G63070.1 | chr3:23302667-23309575 FORWARD LENGTH=1348 82 5e-17
AT2G48160.1 | chr2:19689784-19696584 REVERSE LENGTH=1367 75 7e-15
AT5G08230.1 | chr5:2643846-2649788 REVERSE LENGTH=1446 64 1e-11
AT5G23150.1 | chr5:7786173-7792080 FORWARD LENGTH=1393 64 1e-11
>AT3G63070.1 | chr3:23302667-23309575 FORWARD LENGTH=1348
Length = 1347
Score = 82.0 bits (201), Expect = 5e-17, Method: Composition-based stats.
Identities = 31/47 (65%), Positives = 42/47 (89%)
Query: 28 QWKVGDLVLAKMKGFPAWPAMISEPEQWGQTSVKKKILVYFYGTKQI 74
+WKVGDLVLAK+KGFPAWPA++ EPE+WG ++ KK+ V+F+GT+QI
Sbjct: 21 EWKVGDLVLAKVKGFPAWPAVVDEPEKWGHSADSKKVTVHFFGTQQI 67
>AT2G48160.1 | chr2:19689784-19696584 REVERSE LENGTH=1367
Length = 1366
Score = 75.1 bits (183), Expect = 7e-15, Method: Composition-based stats.
Identities = 30/45 (66%), Positives = 39/45 (86%)
Query: 30 KVGDLVLAKMKGFPAWPAMISEPEQWGQTSVKKKILVYFYGTKQI 74
KVGDLVLAK+KGFPAWPA++SEPE+W + KK+ V+F+GT+QI
Sbjct: 23 KVGDLVLAKVKGFPAWPAVVSEPEKWDASPDSKKVFVHFFGTQQI 67
>AT5G08230.1 | chr5:2643846-2649788 REVERSE LENGTH=1446
Length = 1445
Score = 64.3 bits (155), Expect = 1e-11, Method: Composition-based stats.
Identities = 33/74 (44%), Positives = 40/74 (54%), Gaps = 11/74 (14%)
Query: 1 MAPARKKRXXXXXXXXXXXXXXXXXXXQWKVGDLVLAKMKGFPAWPAMISEPEQWGQTSV 60
MAP RK+ + ++GDLVLAK+KGFPAWPA I +PE W Q
Sbjct: 1 MAPGRKR-----------GANKAMAIGEMRLGDLVLAKVKGFPAWPAKIGQPEDWNQAPD 49
Query: 61 KKKILVYFYGTKQI 74
KK V FYGT +I
Sbjct: 50 PKKHFVQFYGTGEI 63
>AT5G23150.1 | chr5:7786173-7792080 FORWARD LENGTH=1393
Length = 1392
Score = 64.3 bits (155), Expect = 1e-11, Method: Composition-based stats.
Identities = 33/74 (44%), Positives = 40/74 (54%), Gaps = 11/74 (14%)
Query: 1 MAPARKKRXXXXXXXXXXXXXXXXXXXQWKVGDLVLAKMKGFPAWPAMISEPEQWGQTSV 60
MAP RK+ Q +GDLVLAK+KGFPAWPA IS PE W +
Sbjct: 1 MAPGRKR-----------GASKAKAKGQLVLGDLVLAKVKGFPAWPAKISRPEDWDRAPD 49
Query: 61 KKKILVYFYGTKQI 74
KK V F+GT++I
Sbjct: 50 PKKYFVQFFGTEEI 63
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.134 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,238,438
Number of extensions: 31389
Number of successful extensions: 59
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 4
Length of query: 78
Length of database: 11,106,569
Length adjustment: 50
Effective length of query: 28
Effective length of database: 9,735,769
Effective search space: 272601532
Effective search space used: 272601532
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 104 (44.7 bits)