BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0352800 Os03g0352800|AK059673
(135 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G65290.1 | chr1:24249088-24250366 REVERSE LENGTH=127 152 5e-38
AT2G44620.1 | chr2:18414320-18415065 FORWARD LENGTH=123 105 1e-23
AT5G47630.1 | chr5:19306397-19306885 FORWARD LENGTH=132 64 2e-11
AT5G27200.1 | chr5:9571185-9571989 FORWARD LENGTH=140 58 2e-09
AT3G05020.1 | chr3:1391863-1392878 REVERSE LENGTH=138 55 8e-09
AT1G54630.1 | chr1:20401642-20402919 REVERSE LENGTH=137 52 7e-08
AT1G54580.1 | chr1:20389572-20390770 FORWARD LENGTH=137 52 8e-08
>AT1G65290.1 | chr1:24249088-24250366 REVERSE LENGTH=127
Length = 126
Score = 152 bits (384), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 75/100 (75%), Positives = 90/100 (90%), Gaps = 3/100 (3%)
Query: 36 ALCARRWMSSEEAKGSFLDKAEVTERIVKVVRNFQKIDDPAKVTPDAHFKNDLGLDSLDA 95
++ RR+ SEE +GSFLDK+EVT+R++ VV+NFQK+D P+KVTP A+F+NDLGLDSLD+
Sbjct: 30 SILLRRF--SEEVRGSFLDKSEVTDRVLSVVKNFQKVD-PSKVTPKANFQNDLGLDSLDS 86
Query: 96 VEVVMALEEEFGFEIPDNEADKIDSIKVAVDFIASHPQAK 135
VEVVMALEEEFGFEIPDNEADKI SI +AVDFIASHPQAK
Sbjct: 87 VEVVMALEEEFGFEIPDNEADKIQSIDLAVDFIASHPQAK 126
>AT2G44620.1 | chr2:18414320-18415065 FORWARD LENGTH=123
Length = 122
Score = 105 bits (261), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 47/82 (57%), Positives = 66/82 (80%), Gaps = 1/82 (1%)
Query: 53 LDKAEVTERIVKVVRNFQKIDDPAKVTPDAHFKNDLGLDSLDAVEVVMALEEEFGFEIPD 112
L + V +R++ VV++F K+D P+KVTP+ HF+NDLGLDSLD VE+VMA+EEEF EIPD
Sbjct: 41 LSREAVVDRVLDVVKSFPKVD-PSKVTPEVHFQNDLGLDSLDTVEIVMAIEEEFKLEIPD 99
Query: 113 NEADKIDSIKVAVDFIASHPQA 134
EADKIDS +A++++ +HP +
Sbjct: 100 KEADKIDSCSLAIEYVYNHPMS 121
>AT5G47630.1 | chr5:19306397-19306885 FORWARD LENGTH=132
Length = 131
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 57 EVTERIVKVVRNFQKIDDPAKVTPDAHFKNDLGLDSLDAVEVVMALEEEFGFEIPDNEAD 116
++ R++++V+ + K + ++VT A F+ DL LDSLD E+VMA+EEEF EIPD +AD
Sbjct: 50 QILSRVIELVKKYDKTN-TSEVTERADFQKDLSLDSLDKTELVMAIEEEFSIEIPDEKAD 108
Query: 117 KIDSIKVAVDFIASHPQAK 135
K+ +I S K
Sbjct: 109 KLTCCGDVATYILSETPTK 127
>AT5G27200.1 | chr5:9571185-9571989 FORWARD LENGTH=140
Length = 139
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 55 KAEVTERIVKVVRNFQKIDDPAKVTPDAHFKNDLGLDSLDAVEVVMALEEEFGFEIPDNE 114
K E E++ ++V+ + D KVT F +LG DSLD VE+VM LEEEFG + +
Sbjct: 58 KQETVEKVSEIVKKQLSLTDDQKVTAGTKF-TELGADSLDTVEIVMGLEEEFGITMAEER 116
Query: 115 ADKIDSIKVAVDFIASHPQAK 135
A +I +++ A + I Q K
Sbjct: 117 AKEIATVQQAAELIEELVQEK 137
>AT3G05020.1 | chr3:1391863-1392878 REVERSE LENGTH=138
Length = 137
Score = 55.5 bits (132), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 40 RRWMSSEEAKGSFLDKAEVTERIVKVVRNFQKIDDPAKVTPDAHFKNDLGLDSLDAVEVV 99
RR + S S K E E++ +V+ + KV + F DLG DSLD VE+V
Sbjct: 42 RRSIPSRRLSVSCAAKQETIEKVSAIVKKQLSLTPDKKVVAETKFA-DLGADSLDTVEIV 100
Query: 100 MALEEEFGFEIPDNEADKIDSIKVAVDFI 128
M LEEEF ++ + +A KI +++ A + I
Sbjct: 101 MGLEEEFNIQMAEEKAQKIATVEQAAELI 129
>AT1G54630.1 | chr1:20401642-20402919 REVERSE LENGTH=137
Length = 136
Score = 52.4 bits (124), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 55 KAEVTERIVKVVRNFQKIDDPAKVTPDAHFKNDLGLDSLDAVEVVMALEEEFGFEIPDNE 114
K E +++ VVR + + ++T F LG DSLD VE+VM LEEEFG E+ + +
Sbjct: 55 KPETVDKVCAVVRKQLSLKEADEITAATKFAA-LGADSLDTVEIVMGLEEEFGIEMAEEK 113
Query: 115 ADKIDSIKVAVDFI 128
A I +++ A I
Sbjct: 114 AQSIATVEQAAALI 127
>AT1G54580.1 | chr1:20389572-20390770 FORWARD LENGTH=137
Length = 136
Score = 52.0 bits (123), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 55 KAEVTERIVKVVRNFQKIDDPAKVTPDAHFKNDLGLDSLDAVEVVMALEEEFGFEIPDNE 114
K E +++ VVR + + ++T F LG DSLD VE+VM LEEEFG E+ + +
Sbjct: 55 KPETVDKVCAVVRKQLSLKEADEITAATKFAA-LGADSLDTVEIVMGLEEEFGIEMAEEK 113
Query: 115 ADKIDSIKVAVDFI 128
A I +++ A I
Sbjct: 114 AQSIATVEQAAALI 127
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.133 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,246,689
Number of extensions: 77353
Number of successful extensions: 200
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 199
Number of HSP's successfully gapped: 7
Length of query: 135
Length of database: 11,106,569
Length adjustment: 88
Effective length of query: 47
Effective length of database: 8,693,961
Effective search space: 408616167
Effective search space used: 408616167
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 106 (45.4 bits)