BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0347300 Os03g0347300|AK062583
(902 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G62900.1 | chr3:23248868-23254810 REVERSE LENGTH=1466 196 6e-50
AT1G02990.3 | chr1:681724-686996 REVERSE LENGTH=1279 163 4e-40
AT4G15730.1 | chr4:8951887-8957214 REVERSE LENGTH=1060 135 1e-31
>AT3G62900.1 | chr3:23248868-23254810 REVERSE LENGTH=1466
Length = 1465
Score = 196 bits (497), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 110/255 (43%), Positives = 161/255 (63%), Gaps = 9/255 (3%)
Query: 632 ASKNHTQLRSNVENGDSASPIRRDGNMIAFA---LKEARDLKHKANHLKEKGLELESMGL 688
+K Q+R E S SP+R++ A LKEA+DLKH A+ LK LE + L
Sbjct: 1138 VTKATAQIRRKSE--PSPSPLRKEITSAQAAHNTLKEAKDLKHTADRLKNSVSNLEHIEL 1195
Query: 689 YFEAALKFLHVASLWETPNLDNSRSGD-VAQSMKMYSETAKLCSFCAHAYERCNKMASAA 747
YF+A LKFLH A L E + +++R G+ + QSMK+YS TA LC FCAH YE+ M +AA
Sbjct: 1196 YFQACLKFLHGAFLLEMSSNESARQGETMVQSMKIYSSTANLCGFCAHEYEKSKDMGAAA 1255
Query: 748 LAYKCVEVAYLKAAYYKHPSASKDRQELQSVVQ-IAPGESPSSSASDIDNLN-SHGLSKA 805
LAYKC+EVAY++ + SA++ R ELQ+ +Q + PGESPSSSASD+DN+N + +
Sbjct: 1256 LAYKCMEVAYMRVVNSSYTSANRYRNELQTSLQMVPPGESPSSSASDVDNVNHPAAVDRV 1315
Query: 806 LSTKGGNSPQVAGNHLPLAVRNQAHLLRLLAYTNDVNCAFDATRKXXXXXXXXXXXXERG 865
+++G +SP VAGNH+ ++ +N+++LLRLL + DVN + DA+RK
Sbjct: 1316 GTSRGISSPLVAGNHV-ISAQNRSNLLRLLQFAQDVNLSMDASRKSRVALTACIENSGEA 1374
Query: 866 KTVDDGLASVRTVLD 880
+ +G+ S+++ LD
Sbjct: 1375 QQQGEGIISIKSALD 1389
Score = 109 bits (272), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 42/74 (56%), Positives = 56/74 (75%), Gaps = 2/74 (2%)
Query: 15 ASLPA--PVLIEDNWVCCDMCHKWRLLPYGTNTSMLPKKWICSMLDWLPGMNKCDISEDE 72
ASLP PV+I+++WV CD C KWRLLP+G LP+KW+C+ML+WLPG+N C++ EDE
Sbjct: 565 ASLPKANPVIIQEHWVACDKCGKWRLLPFGVFPEDLPEKWMCTMLNWLPGVNYCNVPEDE 624
Query: 73 TTNALNALYVTQIP 86
TT AL A+Y +P
Sbjct: 625 TTKALYAMYQIPVP 638
>AT1G02990.3 | chr1:681724-686996 REVERSE LENGTH=1279
Length = 1278
Score = 163 bits (413), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 107/276 (38%), Positives = 150/276 (54%), Gaps = 15/276 (5%)
Query: 632 ASKNHTQLRSNVENGDSASPIRRDGN--MIAFALKEARDLKHKANHLKEKGLELESMGLY 689
S+N Q S ++ SP +++ + ++KEA DLKH A+ LK ES G+Y
Sbjct: 1011 GSRNQKQNGSRHKDHVGLSPFKKESTSQTASNSIKEATDLKHMADRLKNAVSNHESTGVY 1070
Query: 690 FEAALKFLHVASLWETPNLDNSRSGDVAQSMKMYSETAKLCSFCAHAYERCNKMASAALA 749
F+AALKFLH ASL E+ +RS D+ Y TAKLC FCAH YE+ M +AALA
Sbjct: 1071 FQAALKFLHGASLLESSGTTIARSKDI------YGSTAKLCEFCAHEYEKNKDMGAAALA 1124
Query: 750 YKCVEVAYLKAAYYKHPSASKDRQELQSVVQIAP-GESPSSSASDIDNLNSHGLSK---A 805
YKC+EVAYL+ Y H + + R ELQ+ +Q+ P GESP S ASD +N N H L+ A
Sbjct: 1125 YKCMEVAYLRITYTSHGNIRRCRYELQAALQVIPSGESP-SFASDGENSN-HTLTAEKFA 1182
Query: 806 LSTKGGNSPQVAGNHLPLAVRNQAHLLRLLAYTNDVNCAFDATRKXXXXXXXXXXXXERG 865
LS +SP V GNH+ ++ N + L +LLA++ +VN A +A+RK
Sbjct: 1183 LSNTVRSSPSVTGNHV-ISSGNNSSLSQLLAFSKNVNYAMEASRKAQIALAAAKGKSFET 1241
Query: 866 KTVDDGLASVRTVLDXXXXXXXXXXXXXXXSMELIN 901
+ +G+ ++ LD +ME IN
Sbjct: 1242 RYSSNGITCIKRALDFNFQDMEKLLHVVRLAMESIN 1277
>AT4G15730.1 | chr4:8951887-8957214 REVERSE LENGTH=1060
Length = 1059
Score = 135 bits (340), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 87/220 (39%), Positives = 126/220 (57%), Gaps = 6/220 (2%)
Query: 663 LKEARDLKHKANHLKEKGLELESMGLYFEAALKFLHVASLWETPNLDNSRSGDVAQSMKM 722
L+EA L+ A+ K G E E + F+AAL+FL AS+ E + DN G ++ ++
Sbjct: 814 LQEAEKLRKLADCFKSSGFEYEYKEINFKAALRFLLGASVLEMCSTDNVEVGKMSH-IEA 872
Query: 723 YSETAKLCSFCAHAYERCNKMASAALAYKCVEVAYLKAAYYKHPSASKDRQELQSVVQIA 782
Y AKL CAH YE +MA+A LAYKC EVA ++ Y + S + ELQ +VQ+
Sbjct: 873 YHTAAKLSESCAHQYETSQEMAAATLAYKCTEVACMRLVYGRSLGLSGEWNELQKMVQMT 932
Query: 783 P-GESPSSSASDIDNLNSHG-LSKALSTKGGNSPQVAGNHLPLAVRNQAHLLRLLAYTND 840
P GESPSSSASD+D+ N G + K+ T+ G S VAGN LP+A R+Q + + LL +T
Sbjct: 933 PQGESPSSSASDVDSFNHQGVIKKSAKTRRGLS-HVAGNLLPVA-RSQLNFVPLLDFTGS 990
Query: 841 VNCAFDATRKXXXXXXXXXXXXERGKTVDDGLASVRTVLD 880
+N A +A+ K E K D +++++ V+D
Sbjct: 991 MNLAMEASAKSQNAFKAVTDTSEERKH-GDCISAIKKVVD 1029
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 34/60 (56%), Positives = 43/60 (71%)
Query: 25 DNWVCCDMCHKWRLLPYGTNTSMLPKKWICSMLDWLPGMNKCDISEDETTNALNALYVTQ 84
D W C+ C KWRLLPY NT LP KW+CSM WLPGMN C +SE+ETTNA+ + + ++
Sbjct: 417 DYWAQCESCEKWRLLPYDLNTEKLPDKWLCSMQTWLPGMNHCGVSEEETTNAIKSFHASE 476
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.310 0.127 0.365
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 18,578,257
Number of extensions: 779455
Number of successful extensions: 2139
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2148
Number of HSP's successfully gapped: 5
Length of query: 902
Length of database: 11,106,569
Length adjustment: 108
Effective length of query: 794
Effective length of database: 8,145,641
Effective search space: 6467638954
Effective search space used: 6467638954
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 116 (49.3 bits)