BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0341600 Os03g0341600|AK067497
         (182 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G16660.1  | chr3:5676904-5677788 FORWARD LENGTH=181             60   5e-10
AT3G16670.1  | chr3:5681500-5682111 FORWARD LENGTH=155             59   1e-09

>AT3G16660.1 | chr3:5676904-5677788 FORWARD LENGTH=181
          Length = 180

 Score = 60.5 bits (145), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 37/86 (43%), Positives = 53/86 (61%), Gaps = 4/86 (4%)

Query: 41  VTGVVPCSAGSSINAASVPGFPNAAVQLECG--GRAVAGATADGSGAFAINLGKLTAATL 98
           + GVV CS   + +  S P F NA V+L+CG   R V+ AT + +G F++    +    L
Sbjct: 65  INGVVFCSLNGAPSGTSTPAFANAGVELQCGRQNRVVSTATTNAAGLFSLPTDSI-QMLL 123

Query: 99  TPLLNDRCRVVVTTPLAACDASLAGV 124
           + LL+D CRVVVTTPL+ C+A+L  V
Sbjct: 124 STLLSD-CRVVVTTPLSTCNANLPSV 148



>AT3G16670.1 | chr3:5681500-5682111 FORWARD LENGTH=155
          Length = 154

 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/102 (39%), Positives = 60/102 (58%), Gaps = 6/102 (5%)

Query: 24  ISPHA-AEASSGGAVMGLVTGVVPCSA-GSSINAASVPGFPNAAVQLECGG--RAVAGAT 79
           +SP A A++  GG  + ++ GV+ C+  G+ +N    P F NA VQL+CG   R VA   
Sbjct: 20  VSPMANAQSGLGGINVPIINGVLFCTINGAPLNGTPAPAFANAVVQLQCGNLNRVVAETI 79

Query: 80  ADGSGAFAINLGKLTAATLTPLLNDRCRVVVTTPLAACDASL 121
            + +G F  +   +   +L  LLND CR+VV TP ++CDA+L
Sbjct: 80  TNIAGLFTFSTNGI-QISLPTLLND-CRIVVPTPRSSCDATL 119



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.131    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,425,207
Number of extensions: 74994
Number of successful extensions: 182
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 181
Number of HSP's successfully gapped: 2
Length of query: 182
Length of database: 11,106,569
Length adjustment: 92
Effective length of query: 90
Effective length of database: 8,584,297
Effective search space: 772586730
Effective search space used: 772586730
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 108 (46.2 bits)