BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0340900 Os03g0340900|AK066679
(892 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G02260.1 | chr4:985451-991178 FORWARD LENGTH=885 1055 0.0
AT1G54130.1 | chr1:20211177-20213761 FORWARD LENGTH=716 217 3e-56
AT3G14050.1 | chr3:4650902-4653514 REVERSE LENGTH=710 217 3e-56
AT3G17470.1 | chr3:5979868-5981968 FORWARD LENGTH=584 137 3e-32
>AT4G02260.1 | chr4:985451-991178 FORWARD LENGTH=885
Length = 884
Score = 1055 bits (2729), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 553/876 (63%), Positives = 632/876 (72%), Gaps = 27/876 (3%)
Query: 29 GGRPYECSVLSCAWNAPRALTGALASTTAQCSSCSHAEXXXXXXXXXXXXXXXXXLLHIT 88
G +CS LSCAW APRALTG LAST A CS +
Sbjct: 24 GNARSDCSALSCAWKAPRALTGFLAST-AHPPVCS--------VYSCGRNGRKSRMKACA 74
Query: 89 WAEGINRGKFGYGSSAHSFPTGNFFKS-WSTSVDPTWRVFCYSSSESFN---HISPETLW 144
W + G+ + + N KS S W ++C S+ S ++ ETLW
Sbjct: 75 WQR--YEYEVGFSEAPYFVNVRNILKSRLSCGGHKRWELYCVSAESSSGASSDVTVETLW 132
Query: 145 EDLKPAISYLQPEELNFVHDALKLAYEAHNGQKRRSGEPFIIHPVEVARILGEHELDWES 204
EDL P+ISYL +EL FV LKLA+EAH+GQKRRSGEPFIIHPV VARILGE ELDWES
Sbjct: 133 EDLFPSISYLPRKELEFVQKGLKLAFEAHHGQKRRSGEPFIIHPVAVARILGELELDWES 192
Query: 205 IAAGLLHDTVEDTDMVTFERIENEFGVTVRRIVEGETKVSKLGKLQCKNEGNSKQDVKAE 264
I AGLLHDTVEDT+ +TFE+IE EFG TVR IVEGETKVSKLGKL+CK E + QDVKA+
Sbjct: 193 IVAGLLHDTVEDTNFITFEKIEEEFGATVRHIVEGETKVSKLGKLKCKTESETIQDVKAD 252
Query: 265 DLRQMFLAMTEEVRVIIVKLADRLHNMRTLTHMPQHKQYAIAMETLQVFAPLAKLLGMYR 324
DLRQMFLAMT+EVRVIIVKLADRLHNMRTL HMP HKQ +IA ETLQVFAPLAKLLGMY
Sbjct: 253 DLRQMFLAMTDEVRVIIVKLADRLHNMRTLCHMPPHKQSSIAGETLQVFAPLAKLLGMYS 312
Query: 325 IKSELEYLSFMYMNPGDFAELKKRVEDLYKAHEQELEEANQILGEKIAEDQFLDLVSVET 384
IKSELE LSFMY++ D+ + R+ +LYK HE+EL EAN+IL +KI +DQFLDLV+V T
Sbjct: 313 IKSELENLSFMYVSAEDYDRVTSRIANLYKEHEKELTEANRILVKKIEDDQFLDLVTVNT 372
Query: 385 QVRSVCKELYSIYKTALKSKSSINEINQVA-QLRIIIKPKSCNGVGPLCTAQQICYHVLG 443
VRSVCKE YSIYK ALKSK SIN+ NQ+A QLRI++KPK GVGPLC+ QQICYHVLG
Sbjct: 373 DVRSVCKETYSIYKAALKSKGSINDYNQIAQQLRIVVKPKPSVGVGPLCSPQQICYHVLG 432
Query: 444 LVHGIWTPIPQAVKDYIATPKPNGYQSLHTTVIPFLNESMFHLEVQIRTEDMDLIAERGI 503
LVH IW PIP+ VKDYIATPKPNGYQSLHTTVIPFL ESMF LEVQIRTE+MDLIAERGI
Sbjct: 433 LVHEIWKPIPRTVKDYIATPKPNGYQSLHTTVIPFLYESMFRLEVQIRTEEMDLIAERGI 492
Query: 504 AAHYXXXXXXXXXXXXXXXXXXNSNGKVICLNNTGFALRIGWLNAIREWQEEFVGNMSSR 563
A +Y NS GK CLNN FALR+GWLNAIREWQEEFVGNMSSR
Sbjct: 493 AVYYNGKSLSTGLVGNAVPLGRNSRGKTGCLNNADFALRVGWLNAIREWQEEFVGNMSSR 552
Query: 564 EFVDTITRDLLGSRVFVFTPKGEIKNLPKGATVVDYAYLIHTEIGNKMVAAKVNGNLVSP 623
EFVDTITRDLLGSRVFVFTPKGEIKNLPKGATVVDYAYLIHTEIGNKMVAAKVNGNLVSP
Sbjct: 553 EFVDTITRDLLGSRVFVFTPKGEIKNLPKGATVVDYAYLIHTEIGNKMVAAKVNGNLVSP 612
Query: 624 IHVLANAEVVEIIIYDKLSAKYAFQRHQQWLQHAKTRSARHKIMKFLREQAALSAAEITA 683
HVL NAEVVEI+ Y+ LS+K AFQRH+QWLQHAKTRSARHKIM+FLREQAA AAEIT
Sbjct: 613 THVLENAEVVEIVTYNALSSKSAFQRHKQWLQHAKTRSARHKIMRFLREQAAQCAAEITQ 672
Query: 684 DAVNNFVADLEDESDYEQSIPSSENKDYTFNWQKIL-NSDKLSFGNKKSDCFLPVKNVSV 742
D VN+FVAD +SD E + K + W+KIL N + +K D +N SV
Sbjct: 673 DQVNDFVAD--SDSDVED-LTEDSRKSLQW-WEKILVNVKQFQSQDKSRDTTPAPQNGSV 728
Query: 743 --PKVNGKHNKTVKELGIKINGSTFRGDSFTDFIHPGVSSSKEVLPSVDNWKAGKICAWH 800
PKVNGKHNK +K GD + + + KEVLP +D+W+ KI WH
Sbjct: 729 WAPKVNGKHNKAIKNSSSDEPEFLLPGDGIARILPANIPAYKEVLPGLDSWRDSKIATWH 788
Query: 801 NTEGSSIQWLCIVCVDRKGMVAEVSSALTACGITICSCVAERDKRRGIGVMLFHFEGAYE 860
+ EG SI+WLC+V +DRKG++AEV++ L A GI +CSCVAE D+ RG+ VMLF E E
Sbjct: 789 HLEGQSIEWLCVVSMDRKGIIAEVTTVLAAEGIALCSCVAEIDRGRGLAVMLFQIEANIE 848
Query: 861 NVVSACSGVDMILGVLGWSVGC----SCNPLGVLEC 892
++VS C+ VD++LGVLGWS GC S VLEC
Sbjct: 849 SLVSVCAKVDLVLGVLGWSSGCSWPRSTENAQVLEC 884
>AT1G54130.1 | chr1:20211177-20213761 FORWARD LENGTH=716
Length = 715
Score = 217 bits (552), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 134/339 (39%), Positives = 199/339 (58%), Gaps = 25/339 (7%)
Query: 169 AYEAHNGQKRRSGEPFIIHPVEVARILGEHELDWESIAAGLLHDTVEDTDMVTFERIENE 228
A +AH GQ R +G+P++ H VE A +L + + + AG+LHDT++D+ M +++ I
Sbjct: 222 AEKAHRGQMRATGDPYLQHCVETAMLLADIGANSTVVVAGILHDTLDDSFM-SYDYILRT 280
Query: 229 FGVTVRRIVEGETKVSKLGKLQCKNEGNSKQDVKAEDLRQMFLAMTEEVRVIIVKLADRL 288
FG V +VEG +K+S+L KL +N K V+A+ L MFLAM + R +++KLADRL
Sbjct: 281 FGSGVADLVEGVSKLSQLSKLARENNTACKT-VEADRLHTMFLAMAD-ARAVLIKLADRL 338
Query: 289 HNMRTLTHMPQHKQYAIAMETLQVFAPLAKLLGMYRIKSELEYLSFMYMNPGDFAELKKR 348
HNM TL +P K+ A ETL++FAPLA LG+ K +LE L F +++P E+
Sbjct: 339 HNMMTLYALPPVKRQRFAKETLEIFAPLANRLGISSWKVKLENLCFKHLHPDQHHEMSDM 398
Query: 349 VEDLYKAHEQELEEANQILGEKIAEDQFLDLVSVETQVRSVCKELYSIYKTALKSKSSIN 408
+ED + E + A + L + + ++ V V K LYSIY LK K +++
Sbjct: 399 LEDSFD--EAMITSAIEKLEQALKKEGISYHV-----VSGRHKSLYSIYCKMLKKKLTMD 451
Query: 409 EINQVAQLRIIIKPKSCNGVGPLCTAQQICYHVLGLVHGIWTPIPQAVKDYIATPKPNGY 468
EI+ + LR+I+ ++ CY LG+VH +W+ +P +KDYI+ PK NGY
Sbjct: 452 EIHDIHGLRLIVD------------NEKDCYKALGVVHKLWSEVPGKLKDYISHPKFNGY 499
Query: 469 QSLHTTVIPFLNESMFHLEVQIRTEDMDLIAERGIAAHY 507
QSLHT V + + LEVQIRT++M L AE G AAH+
Sbjct: 500 QSLHTVV---MGDGTIPLEVQIRTKEMHLQAEFGFAAHW 535
>AT3G14050.1 | chr3:4650902-4653514 REVERSE LENGTH=710
Length = 709
Score = 217 bits (552), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 137/342 (40%), Positives = 195/342 (57%), Gaps = 31/342 (9%)
Query: 169 AYEAHNGQKRRSGEPFIIHPVEVARILGEHELDWESIAAGLLHDTVEDTDMVTFERIENE 228
A +AH GQ R S +P++ H VE A +L + + AGLLHDT++D+ M +++ I
Sbjct: 218 AEKAHRGQMRASRDPYLQHCVETAMLLANIGANSTVVVAGLLHDTIDDSFM-SYDYILRN 276
Query: 229 FGVTVRRIVEGETKVSKLGKLQCKNEGNSKQDVKAEDLRQMFLAMTEEVRVIIVKLADRL 288
FG V +VEG +K+S+L KL +N K V+A+ L MFLAM + R +++KLADRL
Sbjct: 277 FGAGVADLVEGVSKLSQLSKLARENNTACKT-VEADRLHTMFLAMAD-ARAVLIKLADRL 334
Query: 289 HNMRTLTHMPQHKQYAIAMETLQVFAPLAKLLGMYRIKSELEYLSFMYMNPGDFAELKKR 348
HNM+TL + KQ A ETL++FAPLA LG+ K +LE L F ++ P E+
Sbjct: 335 HNMKTLYALSPVKQQRFAKETLEIFAPLANRLGISTWKVQLENLCFKHLYPNQHNEMSTM 394
Query: 349 VEDLYKAHEQELEEANQILGEKIAEDQFLDLVSVETQVRSVC---KELYSIYKTALKSKS 405
+ED + E + A + L +Q L + V +C K LYSIY LK K
Sbjct: 395 LEDSFD--EAMITSAIEKL------EQALKKAGISYHV--LCGRHKSLYSIYSKMLKKKL 444
Query: 406 SINEINQVAQLRIIIKPKSCNGVGPLCTAQQICYHVLGLVHGIWTPIPQAVKDYIATPKP 465
+++EI+ + LR+I+ + CY LG+VH +W+ +P +KDYI PK
Sbjct: 445 TVDEIHDIHGLRLIVD------------NEGDCYKALGVVHSLWSEVPGKLKDYITHPKF 492
Query: 466 NGYQSLHTTVIPFLNESMFHLEVQIRTEDMDLIAERGIAAHY 507
NGYQSLHT V ++ LEVQIRT++M L AE G AAH+
Sbjct: 493 NGYQSLHTVV---MDNGTVPLEVQIRTQEMHLQAEFGFAAHW 531
>AT3G17470.1 | chr3:5979868-5981968 FORWARD LENGTH=584
Length = 583
Score = 137 bits (345), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 93/318 (29%), Positives = 158/318 (49%), Gaps = 18/318 (5%)
Query: 194 ILGEHELDWESIAAGLLHDTVEDTDMVTFERIENEFGVTVRRIVEGETKVSKLGKLQCKN 253
IL + ++D E I+A +L + V D + ++ + + G ++ +V +
Sbjct: 122 ILADLQMDAEVISASILSEVV-DANAISIYEVRDHIGTGTAHLLHEIFRVKNI-----PF 175
Query: 254 EGNSKQDVKAEDLRQMFLAMTEEVRVIIVKLADRLHNMRTLTHMPQHKQYAIAMETLQVF 313
+ + D A LR+ +L + +R +I+ L +L MR L H+P+++Q +++E L+++
Sbjct: 176 KVDVLDDETAASLRKFYLTYYD-IRAVIMDLVSKLDEMRHLDHLPRYRQQILSLEVLKIY 234
Query: 314 APLAKLLGMYRIKSELEYLSFMYMNPGDFAELKKRVEDLYKAHEQELEEANQILGEKIAE 373
+PLA +G + ELE +SF Y+ P + L + + HE + + E++
Sbjct: 235 SPLAHAVGANHLSLELEDISFRYLFPCSYIYL----DSWLRGHENGSKPLIDVYKEQLHR 290
Query: 374 DQFLDLVSVE----TQVRSVCKELYSIYKTALKSKSSINEINQVAQLRIIIKPKSCNGVG 429
DLV E ++ K YS+ K L+ E+N V LR+I+ P S V
Sbjct: 291 SLKDDLVLAEMVNDVYIKGRYKSRYSMMKKLLRDGRKPEEVNDVLGLRVILMPNSV--VN 348
Query: 430 PLCTAQQICYHVLGLVHGIWTPIPQAVKDYIATPKPNGYQSLHTTVIPFLNESMFHL-EV 488
+ ++ CY ++ +W IP KDYIA PK NGY+SLH V ++ + L E+
Sbjct: 349 DVEVGEKACYRTSEIIRSLWKEIPHRTKDYIARPKENGYRSLHMAVDVSDSDQIRPLMEI 408
Query: 489 QIRTEDMDLIAERGIAAH 506
QIRT DMD A G A+H
Sbjct: 409 QIRTMDMDGSANAGTASH 426
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.134 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 18,876,392
Number of extensions: 787156
Number of successful extensions: 2188
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2172
Number of HSP's successfully gapped: 4
Length of query: 892
Length of database: 11,106,569
Length adjustment: 107
Effective length of query: 785
Effective length of database: 8,173,057
Effective search space: 6415849745
Effective search space used: 6415849745
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 116 (49.3 bits)