BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0336900 Os03g0336900|Os03g0336900
(301 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G58360.1 | chr5:23590079-23590969 REVERSE LENGTH=297 73 2e-13
AT2G30400.1 | chr2:12956592-12957554 FORWARD LENGTH=321 66 3e-11
AT1G06920.1 | chr1:2124854-2125801 REVERSE LENGTH=316 63 2e-10
AT4G18830.1 | chr4:10337449-10338498 FORWARD LENGTH=350 63 2e-10
AT5G01840.1 | chr5:324552-325364 FORWARD LENGTH=271 59 2e-09
AT5G19650.1 | chr5:6639632-6640297 REVERSE LENGTH=222 54 1e-07
AT2G18500.1 | chr2:8027102-8028049 FORWARD LENGTH=316 54 1e-07
AT3G52525.1 | chr3:19475159-19475638 FORWARD LENGTH=160 48 6e-06
>AT5G58360.1 | chr5:23590079-23590969 REVERSE LENGTH=297
Length = 296
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 47/68 (69%), Gaps = 3/68 (4%)
Query: 225 ESEAVVLESTEPELELVDSMIEMLCTNGVRRLEDLQDLLACYLSLNAAEHHRTIVALFRR 284
+S A+VL S +PE + +SM+EM+ N +R +DL+DLLACYLSLN++E+H I+ F
Sbjct: 224 KSFAIVLSSVDPEKDFRESMVEMIMENKMREQKDLEDLLACYLSLNSSEYHDVIIKAFEN 283
Query: 285 VVLVWIHL 292
W+HL
Sbjct: 284 ---TWLHL 288
>AT2G30400.1 | chr2:12956592-12957554 FORWARD LENGTH=321
Length = 320
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 47/72 (65%), Gaps = 3/72 (4%)
Query: 225 ESEAVVLESTEPELELVDSMIEMLCTNGVRRLEDLQDLLACYLSLNAAEHHRTIVALFRR 284
ES AV+ S +P+ + +SMIEM+ N +R +DL+DLLACYL+LN E+H I+ +F +
Sbjct: 252 ESFAVMKRSVDPKKDFRESMIEMIEENNIRASKDLEDLLACYLTLNPKEYHDLIIHVFEQ 311
Query: 285 VVLVWIHLGSQR 296
+W+ L +
Sbjct: 312 ---IWLQLTKTK 320
>AT1G06920.1 | chr1:2124854-2125801 REVERSE LENGTH=316
Length = 315
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 43/68 (63%), Gaps = 3/68 (4%)
Query: 225 ESEAVVLESTEPELELVDSMIEMLCTNGVRRLEDLQDLLACYLSLNAAEHHRTIVALFRR 284
+S AV+ S +P + +SM+EM+ N +R D++DLL CYL+LN E+H I+ +F
Sbjct: 243 DSFAVIKSSIDPSKDFRESMVEMIAENNIRTSNDMEDLLVCYLTLNPKEYHDLIIKVF-- 300
Query: 285 VVLVWIHL 292
V VW+ +
Sbjct: 301 -VQVWLEV 307
>AT4G18830.1 | chr4:10337449-10338498 FORWARD LENGTH=350
Length = 349
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 44/61 (72%)
Query: 225 ESEAVVLESTEPELELVDSMIEMLCTNGVRRLEDLQDLLACYLSLNAAEHHRTIVALFRR 284
ES AVV S++P+ + DSMIEM+ NG+ E+L++LL CYL LN E+H I+++F++
Sbjct: 282 ESFAVVKCSSDPQKDFRDSMIEMIMENGINHPEELKELLVCYLRLNTDEYHDMIISVFQQ 341
Query: 285 V 285
V
Sbjct: 342 V 342
>AT5G01840.1 | chr5:324552-325364 FORWARD LENGTH=271
Length = 270
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 43/65 (66%), Gaps = 3/65 (4%)
Query: 229 VVLESTEPELELVDSMIEMLCTNGVRRLEDLQDLLACYLSLNAAEHHRTIVALFRRVVLV 288
VV S +P+ + +SM EM+ N +R +DL++LLACYL LN+ E+H I+ +F++ +
Sbjct: 202 VVKASVDPKRDFKESMEEMIAENKIRATKDLEELLACYLCLNSDEYHAIIINVFKQ---I 258
Query: 289 WIHLG 293
W+ L
Sbjct: 259 WLDLN 263
>AT5G19650.1 | chr5:6639632-6640297 REVERSE LENGTH=222
Length = 221
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 37/58 (63%)
Query: 225 ESEAVVLESTEPELELVDSMIEMLCTNGVRRLEDLQDLLACYLSLNAAEHHRTIVALF 282
ES AVV +S +P + SM+EM+ + +LQ LL C+LSLN+ +HH+ IV +F
Sbjct: 154 ESFAVVKKSKDPYEDFRTSMVEMIVERQIFAPAELQQLLQCFLSLNSRQHHKVIVQVF 211
>AT2G18500.1 | chr2:8027102-8028049 FORWARD LENGTH=316
Length = 315
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 3/68 (4%)
Query: 225 ESEAVVLESTEPELELVDSMIEMLCTNGVRRLEDLQDLLACYLSLNAAEHHRTIVALFRR 284
E AVV +S +P + SM+EM+ + + +L+ LL+C+LSLNA HHR IV F
Sbjct: 226 EGVAVVKKSEDPYEDFKGSMMEMIVEKKMFEVAELEQLLSCFLSLNAKRHHRAIVRAFSE 285
Query: 285 VVLVWIHL 292
+W+ L
Sbjct: 286 ---IWVAL 290
>AT3G52525.1 | chr3:19475159-19475638 FORWARD LENGTH=160
Length = 159
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 37/60 (61%)
Query: 226 SEAVVLESTEPELELVDSMIEMLCTNGVRRLEDLQDLLACYLSLNAAEHHRTIVALFRRV 285
S AV +S +P L+ SM++M+ N + ++L++LL C+LSLN+ HH IV F +
Sbjct: 67 SVAVEKDSDDPYLDFRQSMLQMILENQIYSKDELRELLQCFLSLNSHYHHGIIVRAFSEI 126
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.322 0.135 0.423
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,543,835
Number of extensions: 92103
Number of successful extensions: 206
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 208
Number of HSP's successfully gapped: 8
Length of query: 301
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 203
Effective length of database: 8,419,801
Effective search space: 1709219603
Effective search space used: 1709219603
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 111 (47.4 bits)