BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0335100 Os03g0335100|AK107094
         (326 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G47430.1  | chr5:19235819-19240596 REVERSE LENGTH=893          115   3e-26
AT4G17410.3  | chr4:9716360-9721642 FORWARD LENGTH=828            108   3e-24

>AT5G47430.1 | chr5:19235819-19240596 REVERSE LENGTH=893
          Length = 892

 Score =  115 bits (289), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 66/193 (34%), Positives = 80/193 (41%), Gaps = 47/193 (24%)

Query: 23  DEEKAISAVIDAAQLKWEAPTSQG-------------GHCYXXXXXXXXXXXXXXYVCHR 69
           DEE  I A+ID   L W+    Q              G                 YVCHR
Sbjct: 153 DEESKIQALIDTPALDWQQRQGQDTFGAGRGYGRGMPGRMNGRGFGMERKTPPPGYVCHR 212

Query: 70  CRVPGHFIQHCPTNGDPRFDIPRVXXXX-------------------------------- 97
           C +PGHFIQHCPTNGDP +D+ RV                                    
Sbjct: 213 CNIPGHFIQHCPTNGDPNYDVKRVKPPTGIPKSMLMATPDGSYSLPSGAVAVLKPNEDAF 272

Query: 98  -XXXXXXXXXXXXXXVIPAELYCKICRNVMANAVLASKCCFDSFCDRCIRDHIAAKSRCA 156
                           +P EL C +C+ VM +A L SKCC+ SFCD+CIRDHI +KS C 
Sbjct: 273 EKEMEGLPSTTRSVGELPPELKCPLCKEVMKDAALTSKCCYKSFCDKCIRDHIISKSMCV 332

Query: 157 CG-AQARAGDLIP 168
           CG +   A DL+P
Sbjct: 333 CGRSDVLADDLLP 345



>AT4G17410.3 | chr4:9716360-9721642 FORWARD LENGTH=828
          Length = 827

 Score =  108 bits (271), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 67/197 (34%), Positives = 78/197 (39%), Gaps = 52/197 (26%)

Query: 21  VDDEEKAISAVIDAAQLKWEAPTSQGGHCY---------------XXXXXXXXXXXXXXY 65
            DDEE  + A+ID   L W     QG   +                             Y
Sbjct: 145 ADDEETKLKALIDTPALDWH---QQGADSFGPGRGYGRGMAGRMGGRGFGMERTTPPPGY 201

Query: 66  VCHRCRVPGHFIQHCPTNGDPRFDIPRVX------------------------------- 94
           VCHRC V GHFIQHC TNG+P FD+ RV                                
Sbjct: 202 VCHRCNVSGHFIQHCSTNGNPNFDVKRVKPPTGIPKSMLMATPNGSYSLPSGAVAVLKPN 261

Query: 95  --XXXXXXXXXXXXXXXXXVIPAELYCKICRNVMANAVLASKCCFDSFCDRCIRDHIAAK 152
                                P EL C +C+ VM +A LASKCC  S+CD+CIRDHI AK
Sbjct: 262 EDAFEKEMEGLTSTTRSVGEFPPELKCPLCKEVMRDAALASKCCLKSYCDKCIRDHIIAK 321

Query: 153 SRCACGA-QARAGDLIP 168
           S C CGA    A DL+P
Sbjct: 322 SMCVCGATHVLADDLLP 338



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.324    0.138    0.449 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,530,571
Number of extensions: 132698
Number of successful extensions: 316
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 315
Number of HSP's successfully gapped: 4
Length of query: 326
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 227
Effective length of database: 8,392,385
Effective search space: 1905071395
Effective search space used: 1905071395
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 112 (47.8 bits)