BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0332500 Os03g0332500|J100071I16
(149 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G38600.1 | chr2:16145907-16146857 FORWARD LENGTH=252 172 5e-44
AT4G29260.1 | chr4:14422310-14423409 REVERSE LENGTH=256 136 4e-33
AT4G25150.1 | chr4:12901736-12902882 REVERSE LENGTH=261 124 2e-29
AT5G51260.1 | chr5:20832222-20833466 REVERSE LENGTH=258 122 1e-28
AT4G29270.1 | chr4:14423797-14424848 REVERSE LENGTH=257 112 8e-26
AT5G24770.1 | chr5:8500713-8501844 REVERSE LENGTH=266 95 1e-20
AT5G24780.1 | chr5:8507783-8508889 REVERSE LENGTH=271 94 2e-20
AT1G04040.1 | chr1:1042564-1043819 REVERSE LENGTH=272 89 1e-18
AT5G44020.1 | chr5:17712433-17714046 FORWARD LENGTH=273 89 1e-18
>AT2G38600.1 | chr2:16145907-16146857 FORWARD LENGTH=252
Length = 251
Score = 172 bits (437), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 81/127 (63%), Positives = 99/127 (77%), Gaps = 1/127 (0%)
Query: 23 YDPSAFKTWASKGACPGIPAVLELFATLQAKGFKVFLLSGRDEETLATCTSENLESEGFL 82
YDP+ F+TWA KG P I VLELF L GFKVFL++GRDEETL T ENL ++GF
Sbjct: 126 YDPTGFRTWAMKGESPAIQPVLELFYKLIETGFKVFLVTGRDEETLRQATLENLHNQGFT 185
Query: 83 GYERLIMRSPEYRGQSSSVFKSAMRKRLVEEEGYRIRGNVGDQWSDLQGDYVGDRVFKIP 142
GYERLIMR+ + + QS++ +K+ +RK ++ EEGYRI GNVGDQWSDLQG+Y GDR FKIP
Sbjct: 186 GYERLIMRTADNKRQSATTYKTRIRKEMM-EEGYRIWGNVGDQWSDLQGEYSGDRTFKIP 244
Query: 143 NPMYYVP 149
NPMY+VP
Sbjct: 245 NPMYFVP 251
>AT4G29260.1 | chr4:14422310-14423409 REVERSE LENGTH=256
Length = 255
Score = 136 bits (343), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 64/130 (49%), Positives = 85/130 (65%), Gaps = 2/130 (1%)
Query: 20 SRAYDPSAFKTWASKGACPGIPAVLELFATLQAKGFKVFLLSGRDEETLATCTSENLESE 79
S YD + F W +G P A L L+ L+ GF + LL+GRDE T T NL
Sbjct: 128 SEPYDDNKFSEWVEQGTAPAFDASLRLYNALKKLGFTIILLTGRDEHQ-RTSTETNLRDA 186
Query: 80 GFLGYERLIMRSPEYRGQSSSVFKSAMRKRLVEEEGYRIRGNVGDQWSDLQGDYVGDRVF 139
G+ G+ERL++R P +G+S++ +KS R +L+EE G++IRGN GDQWSDLQG V DR F
Sbjct: 187 GYSGWERLLLRGPNDQGKSATNYKSEQRSKLIEE-GFKIRGNSGDQWSDLQGFAVADRSF 245
Query: 140 KIPNPMYYVP 149
K+PNPMYY+P
Sbjct: 246 KVPNPMYYIP 255
>AT4G25150.1 | chr4:12901736-12902882 REVERSE LENGTH=261
Length = 260
Score = 124 bits (310), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 59/128 (46%), Positives = 84/128 (65%), Gaps = 2/128 (1%)
Query: 22 AYDPSAFKTWASKGACPGIPAVLELFATLQAKGFKVFLLSGRDEETLATCTSENLESEGF 81
+D S F W KG P I L+L+ + G+KV LL+GR E T ENL + GF
Sbjct: 135 VFDHSKFDMWVEKGIAPAIAPSLKLYQKVIHLGYKVILLTGR-RENHRVITVENLRNAGF 193
Query: 82 LGYERLIMRSPEYRGQSSSVFKSAMRKRLVEEEGYRIRGNVGDQWSDLQGDYVGDRVFKI 141
+++LI+RS + R ++++++KS R+ +V+E GYRIRGN GDQWSDL G + +R FK+
Sbjct: 194 HNWDKLILRSLDDRNKTATMYKSEKREEMVKE-GYRIRGNSGDQWSDLLGSAMSERSFKL 252
Query: 142 PNPMYYVP 149
PNPMYY+P
Sbjct: 253 PNPMYYIP 260
>AT5G51260.1 | chr5:20832222-20833466 REVERSE LENGTH=258
Length = 257
Score = 122 bits (305), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 59/127 (46%), Positives = 84/127 (66%), Gaps = 2/127 (1%)
Query: 23 YDPSAFKTWASKGACPGIPAVLELFATLQAKGFKVFLLSGRDEETLATCTSENLESEGFL 82
+D S F W +G P I L+L+ + G+KVFLL+GR +E+ T ENL + GF
Sbjct: 133 FDHSEFDKWVERGVAPAIAPSLKLYQRVLDLGYKVFLLTGR-KESHRLVTVENLINAGFQ 191
Query: 83 GYERLIMRSPEYRGQSSSVFKSAMRKRLVEEEGYRIRGNVGDQWSDLQGDYVGDRVFKIP 142
+++LI+RSPE + + ++++KS R +V+E GYRIRGN GDQWSDL G + R FK+
Sbjct: 192 NWDKLILRSPEEQHKMATLYKSEKRDEMVKE-GYRIRGNSGDQWSDLLGTSMSQRSFKLA 250
Query: 143 NPMYYVP 149
NPMYY+P
Sbjct: 251 NPMYYIP 257
>AT4G29270.1 | chr4:14423797-14424848 REVERSE LENGTH=257
Length = 256
Score = 112 bits (280), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 57/129 (44%), Positives = 78/129 (60%), Gaps = 2/129 (1%)
Query: 20 SRAYDPSAFKTWASKGACPGIPAVLELFATLQAKGFKVFLLSGRDEETLATCTSENLESE 79
S YD + KG PG A L L+ L+ GF + LL+GRDE + T +NL
Sbjct: 129 SEPYDSIKYNEVVEKGKDPGYDASLRLYKALKKLGFTIILLTGRDEGH-RSVTEKNLRDA 187
Query: 80 GFLGYERLIMRSPEYRGQSSSVFKSAMRKRLVEEEGYRIRGNVGDQWSDLQGDYVGDRVF 139
G+ G+ RL++R +G++++ +KS R ++V+E GY I GN GDQWSDL G V R F
Sbjct: 188 GYFGWNRLLLRGQNDQGKTATQYKSEQRSQVVKE-GYTIHGNTGDQWSDLLGFAVASRSF 246
Query: 140 KIPNPMYYV 148
K+PNPMYYV
Sbjct: 247 KVPNPMYYV 255
>AT5G24770.1 | chr5:8500713-8501844 REVERSE LENGTH=266
Length = 265
Score = 95.1 bits (235), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 54/127 (42%), Positives = 75/127 (59%), Gaps = 5/127 (3%)
Query: 24 DPSAFKTWASKGA-CPGIPAVLELFATLQAKGFKVFLLSGRDEETLATCTSENLESEGFL 82
DP A+ W GA PG+P L L+ + G + +LS R + T +NLE+ G
Sbjct: 142 DPGAYWLWLGTGASTPGLPEALHLYQNIIELGIEPIILSDR-WKLWKNVTLDNLEAAGVT 200
Query: 83 GYERLIMRSPEYRGQSSSVFKSAMRKRLVEEEGYRIRGNVGDQWSDLQGDYVGDRVFKIP 142
++ LI++ P V+KS +RK LV++ GY I GN+GDQW+DL D G RVFK+P
Sbjct: 201 YWKHLILK-PNGSNLRQVVYKSKVRKSLVKK-GYNIVGNIGDQWADLVEDTPG-RVFKLP 257
Query: 143 NPMYYVP 149
NP+YYVP
Sbjct: 258 NPLYYVP 264
>AT5G24780.1 | chr5:8507783-8508889 REVERSE LENGTH=271
Length = 270
Score = 94.0 bits (232), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/126 (41%), Positives = 78/126 (61%), Gaps = 5/126 (3%)
Query: 25 PSAFKTWASKG-ACPGIPAVLELFATLQAKGFKVFLLSGRDEETLATCTSENLESEGFLG 83
P A+ +W G + PG+P L L+ L G + ++S R ++ L+ T ENL++ G
Sbjct: 148 PGAYWSWLESGESTPGLPETLHLYENLLELGIEPIIISDRWKK-LSEVTVENLKAVGVTK 206
Query: 84 YERLIMRSPEYRGQSSSVFKSAMRKRLVEEEGYRIRGNVGDQWSDLQGDYVGDRVFKIPN 143
++ LI++ P + V+KS +R LV++ GY I GN+GDQW+DL D G RVFK+PN
Sbjct: 207 WKHLILK-PNGSKLTQVVYKSKVRNSLVKK-GYNIVGNIGDQWADLVEDTPG-RVFKLPN 263
Query: 144 PMYYVP 149
P+YYVP
Sbjct: 264 PLYYVP 269
>AT1G04040.1 | chr1:1042564-1043819 REVERSE LENGTH=272
Length = 271
Score = 88.6 bits (218), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 75/132 (56%), Gaps = 2/132 (1%)
Query: 17 YFYSRAYDPSAFKTWASKGACPGIPAVLELFATLQAKGFKVFLLSGRDEETLATCTSENL 76
+F + + F+ W K P +P + +L+ ++ +G K+FL+S R +E L + T +NL
Sbjct: 141 FFGGEKLNSTKFEDWIQKKKAPAVPHMKKLYHDIRERGIKIFLISSR-KEYLRSATVDNL 199
Query: 77 ESEGFLGYERLIMRSPEYRGQSSSVFKSAMRKRLVEEEGYRIRGNVGDQWSDLQGDYVGD 136
G+ G+ L++R E + + +KS RK L+ GYR+ G +GDQWS G +
Sbjct: 200 IQAGYYGWSNLMLRGLEDQQKEVKQYKSEKRKWLMSL-GYRVWGVMGDQWSSFAGCPLPR 258
Query: 137 RVFKIPNPMYYV 148
R FK+PN +YYV
Sbjct: 259 RTFKLPNSIYYV 270
>AT5G44020.1 | chr5:17712433-17714046 FORWARD LENGTH=273
Length = 272
Score = 88.6 bits (218), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 75/131 (57%), Gaps = 2/131 (1%)
Query: 18 FYSRAYDPSAFKTWASKGACPGIPAVLELFATLQAKGFKVFLLSGRDEETLATCTSENLE 77
F + + F+ W + G P +P +++L+ ++ +GFK+FL+S R +E L + T ENL
Sbjct: 143 FGGEQLNTTKFEEWQNSGKAPAVPHMVKLYHEIRERGFKIFLISSR-KEYLRSATVENLI 201
Query: 78 SEGFLGYERLIMRSPEYRGQSSSVFKSAMRKRLVEEEGYRIRGNVGDQWSDLQGDYVGDR 137
G+ + L++R + +S S +K+ +R L GYR+ G +G QW+ G V R
Sbjct: 202 EAGYHSWSNLLLRGEDDEKKSVSQYKADLRTWLT-SLGYRVWGVMGAQWNSFSGCPVPKR 260
Query: 138 VFKIPNPMYYV 148
FK+PN +YYV
Sbjct: 261 TFKLPNSIYYV 271
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.137 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,346,283
Number of extensions: 128787
Number of successful extensions: 278
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 264
Number of HSP's successfully gapped: 9
Length of query: 149
Length of database: 11,106,569
Length adjustment: 89
Effective length of query: 60
Effective length of database: 8,666,545
Effective search space: 519992700
Effective search space used: 519992700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 107 (45.8 bits)