BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0332400 Os03g0332400|AK103161
(258 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G10850.1 | chr3:3397756-3399522 REVERSE LENGTH=259 409 e-115
AT1G06130.1 | chr1:1858034-1860640 REVERSE LENGTH=332 184 5e-47
AT2G31350.1 | chr2:13368451-13370802 FORWARD LENGTH=325 182 1e-46
AT2G43430.1 | chr2:18035569-18038064 REVERSE LENGTH=332 162 2e-40
AT1G53580.1 | chr1:19991542-19993250 REVERSE LENGTH=295 90 1e-18
>AT3G10850.1 | chr3:3397756-3399522 REVERSE LENGTH=259
Length = 258
Score = 409 bits (1051), Expect = e-115, Method: Compositional matrix adjust.
Identities = 189/257 (73%), Positives = 218/257 (84%)
Query: 1 MKIIPVACLEDNYAYLIVDESTKSAAAVDPVEPEKVLAAAAEVGVRIDCVLTTHHHWDHA 60
MKI V CL+DNY+YLI+DEST AA VDPV+PEKV+A+A + +I VLTTHHHWDHA
Sbjct: 1 MKIFHVPCLQDNYSYLIIDESTGDAAVVDPVDPEKVIASAEKHQAKIKFVLTTHHHWDHA 60
Query: 61 GGNEKMAQSVPGIKVYGGSLDNVKGCTDQVENGTKLSLGKDIEILCLHTPCHTKGHISYY 120
GGNEK+ Q VP IKVYGGSLD VKGCTD V+NG KL+LG+DI IL LHTPCHTKGHISYY
Sbjct: 61 GGNEKIKQLVPDIKVYGGSLDKVKGCTDAVDNGDKLTLGQDINILALHTPCHTKGHISYY 120
Query: 121 VTSKEEEDPAVFTGDTLFIAGCGRFFEGTAEQMYQSLCVTLGSLPKPTQVYCGHEYTVKN 180
V KE E+PAVFTGDTLF+AGCG+FFEGTAEQMYQSLCVTL +LPKPTQVYCGHEYTVKN
Sbjct: 121 VNGKEGENPAVFTGDTLFVAGCGKFFEGTAEQMYQSLCVTLAALPKPTQVYCGHEYTVKN 180
Query: 181 LKFILTVEPDNEKVKQKLEWAQKQREANQPTIPSTIGEEFETNTFMRVDLPEIQAKFGAK 240
L+F LTVEP+N K++QKL WA++QR+A+ PTIPST+ EE ETN FMRVD PEIQ K G K
Sbjct: 181 LEFALTVEPNNGKIQQKLAWARQQRQADLPTIPSTLEEELETNPFMRVDKPEIQEKLGCK 240
Query: 241 SPVEALREVRKTKDNWK 257
SP++ +REVR KD W+
Sbjct: 241 SPIDTMREVRNKKDQWR 257
>AT1G06130.1 | chr1:1858034-1860640 REVERSE LENGTH=332
Length = 331
Score = 184 bits (466), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 104/264 (39%), Positives = 149/264 (56%), Gaps = 14/264 (5%)
Query: 1 MKIIPVACLEDNYAYLIVDESTKSAAAVDPVEPEKVLAAAAEVGVRIDCVLTTHHHWDHA 60
++I V CL DNYAY++ DE T + VDP E V+ A + + +L THHH+DH
Sbjct: 76 LQIELVPCLTDNYAYILHDEDTGTVGVVDPSEAVPVMDALQKNSRNLTYILNTHHHYDHT 135
Query: 61 GGNEKMAQSVPGIKVYGGSLDN--VKGCTDQVENGTK-LSLGKDIEILCLHTPCHTKGHI 117
GGN ++ G KV G + D + G +++ K + G ++ I+ TP HT+GHI
Sbjct: 136 GGNLELKDRY-GAKVIGSAADRDRIPGIDVALKDADKWMFAGHEVHIM--ETPGHTRGHI 192
Query: 118 SYYVTSKEEEDPAVFTGDTLFIAGCGRFFEGTAEQMYQSLCVTLGSLPKPTQVYCGHEYT 177
S+Y A+FTGDTLF CG+ FEGT EQM SL + +LP T VYCGHEYT
Sbjct: 193 SFYFPGAR----AIFTGDTLFSLSCGKLFEGTPEQMLASLQRII-ALPDDTSVYCGHEYT 247
Query: 178 VKNLKFILTVEPDNEKVKQKLEWAQKQREANQPTIPSTIGEEFETNTFMRVDLPEIQAKF 237
+ N KF L++EP NE ++ + + R+ PTIP+T+ E N F+R + +I+
Sbjct: 248 LSNSKFALSIEPTNEVLQSYAAYVAELRDKKLPTIPTTMKMEKACNPFLRTENTDIRRAL 307
Query: 238 G---AKSPVEALREVRKTKDNWKS 258
G EAL +R+ KDN+K+
Sbjct: 308 GIPETADEAEALGIIRRAKDNFKA 331
>AT2G31350.1 | chr2:13368451-13370802 FORWARD LENGTH=325
Length = 324
Score = 182 bits (462), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 102/261 (39%), Positives = 145/261 (55%), Gaps = 12/261 (4%)
Query: 1 MKIIPVACLEDNYAYLIVDESTKSAAAVDPVEPEKVLAAAAEVGVRIDCVLTTHHHWDHA 60
++I V CL+DNYAY++ DE T + VDP E E ++ + G + +L THHH+DH
Sbjct: 71 LQIELVPCLKDNYAYILHDEDTGTVGVVDPSEAEPIIDSLKRSGRNLTYILNTHHHYDHT 130
Query: 61 GGNEKMAQSVPGIKVYGGSL--DNVKGCTDQVENGTKLSLGKDIEILCLHTPCHTKGHIS 118
GGN ++ G KV G ++ D + G +++G K E+ + TP HTKGHIS
Sbjct: 131 GGNLELKDRY-GAKVIGSAMDKDRIPGIDMALKDGDKWMFAGH-EVHVMDTPGHTKGHIS 188
Query: 119 YYVTSKEEEDPAVFTGDTLFIAGCGRFFEGTAEQMYQSLCVTLGSLPKPTQVYCGHEYTV 178
Y A+FTGDT+F CG+ FEGT +QM SL + SLP T +YCGHEYT+
Sbjct: 189 LYFPGSR----AIFTGDTMFSLSCGKLFEGTPKQMLASL-QKITSLPDDTSIYCGHEYTL 243
Query: 179 KNLKFILTVEPDNEKVKQKLEWAQKQREANQPTIPSTIGEEFETNTFMRVDLPEIQAKFG 238
N KF L++EP+NE ++ + R PTIP+T+ E N F+R +I+
Sbjct: 244 SNSKFALSLEPNNEVLQSYAAHVAELRSKKLPTIPTTVKMEKACNPFLRSSNTDIRRALR 303
Query: 239 ---AKSPVEALREVRKTKDNW 256
A EAL +RK KD++
Sbjct: 304 IPEAADEAEALGIIRKAKDDF 324
>AT2G43430.1 | chr2:18035569-18038064 REVERSE LENGTH=332
Length = 331
Score = 162 bits (410), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 95/261 (36%), Positives = 137/261 (52%), Gaps = 12/261 (4%)
Query: 1 MKIIPVACLEDNYAYLIVDESTKSAAAVDPVEPEKVLAAAAEVGVRIDCVLTTHHHWDHA 60
+KI V C +DNYAYL+ DE T + VDP E V+ A + + +L THHH DH
Sbjct: 78 LKIELVPCSKDNYAYLLHDEDTGTVGVVDPSEAAPVIEALSRKNWNLTYILNTHHHDDHI 137
Query: 61 GGNEKMAQSVPGIKVYGGSL--DNVKGCTDQVENGTKLSLGKDIEILCLHTPCHTKGHIS 118
GGN ++ + G KV G ++ D + G +++ K E+ L TP HT+GHIS
Sbjct: 138 GGNAELKERY-GAKVIGSAVDKDRIPGIDILLKDSDKWMFAGH-EVRILDTPGHTQGHIS 195
Query: 119 YYVTSKEEEDPAVFTGDTLFIAGCGRFFEGTAEQMYQSLCVTLGSLPKPTQVYCGHEYTV 178
+Y +FTGD ++ CG EGT EQM SL + SLP T +YCG E T
Sbjct: 196 FYFPGSA----TIFTGDLIYSLSCGTLSEGTPEQMLSSL-QKIVSLPDDTNIYCGRENTA 250
Query: 179 KNLKFILTVEPDNEKVKQKLEWAQKQREANQPTIPSTIGEEFETNTFMRVDLPEIQAKFG 238
NLKF L+VEP NE ++ R P+IP+T+ E N F+R+ +I+
Sbjct: 251 GNLKFALSVEPKNETLQSYATRVAHLRSQGLPSIPTTVKVEKACNPFLRISSKDIRKSLS 310
Query: 239 ---AKSPVEALREVRKTKDNW 256
+ + EALR +++ +D +
Sbjct: 311 IPDSATEAEALRRIQRARDRF 331
>AT1G53580.1 | chr1:19991542-19993250 REVERSE LENGTH=295
Length = 294
Score = 90.1 bits (222), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/173 (34%), Positives = 93/173 (53%), Gaps = 12/173 (6%)
Query: 13 YAYLIVDES--TKSAAAVDPVEP--EKVLAAAAEVGVRIDCVLTTHHHWDHAGGNEKMAQ 68
+ YL+ D S K A +DPV+ ++ L E+G+++ + TH H DH G +
Sbjct: 65 FTYLLADVSHPDKPALLIDPVDKTVDRDLKLIDELGLKLIYAMNTHVHADHVTGTGLLKT 124
Query: 69 SVPGIKVYGGSLDNVKGCTDQVENGTKLSLGKDIEILCLHTPCHTKGHISYYVTSKEEED 128
+PG+K K +E G K+S+G DI + TP HT G ++Y VT + +
Sbjct: 125 KLPGVKSVISKASGSKADL-FLEPGDKVSIG-DIYLEVRATPGHTAGCVTY-VTGEGADQ 181
Query: 129 P---AVFTGDTLFIAGCGR--FFEGTAEQMYQSLCVTLGSLPKPTQVYCGHEY 176
P FTGD + I GCGR F EG+++Q+Y+S+ + +LPK T +Y H+Y
Sbjct: 182 PQPRMAFTGDAVLIRGCGRTDFQEGSSDQLYESVHSQIFTLPKDTLIYPAHDY 234
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.315 0.133 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,122,545
Number of extensions: 260888
Number of successful extensions: 652
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 640
Number of HSP's successfully gapped: 5
Length of query: 258
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 162
Effective length of database: 8,474,633
Effective search space: 1372890546
Effective search space used: 1372890546
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 110 (47.0 bits)