BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0330300 Os03g0330300|AK060756
(1073 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G14172.1 | chr3:4698860-4704773 REVERSE LENGTH=1271 82 1e-15
AT1G17360.1 | chr1:5947441-5951399 FORWARD LENGTH=1062 73 7e-13
AT4G27430.1 | chr4:13718817-13722736 FORWARD LENGTH=1059 69 1e-11
AT1G61100.1 | chr1:22508831-22512122 REVERSE LENGTH=809 65 1e-10
AT5G43310.1 | chr5:17379735-17385387 REVERSE LENGTH=1238 62 2e-09
AT1G72410.2 | chr1:27251535-27256246 REVERSE LENGTH=1271 60 5e-09
>AT3G14172.1 | chr3:4698860-4704773 REVERSE LENGTH=1271
Length = 1270
Score = 82.4 bits (202), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 99/214 (46%), Gaps = 19/214 (8%)
Query: 9 VELDSAVFQVSSAQNRYEAIACSKGNTELIASGPFDQLVLHLEDARKFQSCSTAGTFKLS 68
+ LD AVFQ+S ++R E + GNTE +ASG V HL+ A + Q + +L
Sbjct: 5 IPLDYAVFQLSPKRSRCELFVSTTGNTEKLASGLVKPFVAHLKVAEE-QVSREVQSIRLE 63
Query: 69 LSGNAKGSSWFTKSTIARFLNTINSPDASKSANGILHEISQLEETRKFHQSLYSKEQRNP 128
+ N +WFTK T+ RF+ +++P+ + + + E+SQLE RK + S +QR+
Sbjct: 64 VESNKNAGTWFTKGTLERFVRFVSTPEVLELVSALDVEMSQLEAARKIYGEGTS-DQRS- 121
Query: 129 MGGALSGGVFGTIGVEQQGNVGPNSSEATKNEXXXXXXXXXXXXKEEIFALLNRAVVSNM 188
+ + P +++ TK E ++++ NRA +
Sbjct: 122 -------------SAKDSTDTTP-AADVTKKELLKAIDLRLAAVRQDLATACNRASAAGF 167
Query: 189 STRDVSDLSSFVQHFGASEFSWLMRCLLLIPDCQ 222
+ VS+LS F FGA+ + C I CQ
Sbjct: 168 NPITVSELSQFADRFGANRLN--EACTKFITLCQ 199
>AT1G17360.1 | chr1:5947441-5951399 FORWARD LENGTH=1062
Length = 1061
Score = 73.2 bits (178), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 83/195 (42%), Gaps = 29/195 (14%)
Query: 11 LDSAVFQVSSAQNRYEAIACSKGNTELIASGPFDQLVLHLEDARKFQSCSTAGTFKLSLS 70
LD AVF++S +R E S E +ASG + V HL S + +L +
Sbjct: 7 LDYAVFELSPKYSRCELFVSSNEEREKLASGLIEPFVNHLRVIESQASKRDQSSVRLEVE 66
Query: 71 GNAKGSSWFTKSTIARFLNTINSPDASKSANGILHEISQLEETRKFHQSLYSKEQRNPMG 130
+ G SWFT+ T+ RF+ +NSP+ + N E+SQLE R +LYS++
Sbjct: 67 QSENGESWFTRRTLERFVQYVNSPEVLERVNTFDLEMSQLEAAR----TLYSQDD----- 117
Query: 131 GALSGGVFGTIGVEQQGNVGPNSSEATKNEXXXXXXXXXXXXKEEIFALLNRAVVSNMST 190
GGV ++AT+ E K+++ + A +
Sbjct: 118 ----GGV----------------ADATQKELVRAIDLRLEAIKKDLTTAIAHASANGFDP 157
Query: 191 RDVSDLSSFVQHFGA 205
+ VSDL F FGA
Sbjct: 158 QTVSDLQRFADRFGA 172
>AT4G27430.1 | chr4:13718817-13722736 FORWARD LENGTH=1059
Length = 1058
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 105/242 (43%), Gaps = 34/242 (14%)
Query: 11 LDSAVFQVSSAQNRYEAIACSKGNTELIASGPFDQLVLHLEDARKFQSCSTAGTFKLSLS 70
LD A+FQ++ + R + + S G E +ASG F V HL + + G + ++L
Sbjct: 7 LDYALFQLTPTRTRCDLVIFSGGENEKLASGIFQPFVTHL---KSVSDQISKGGYSVTLR 63
Query: 71 GNAKGSSWFTKSTIARFLNTINSPDASKSANGILHEISQLEET-RKFHQSLYSKEQRNPM 129
++ G WFTK T+ RF+ + +P+ + + + EI Q+E++ + ++ + + N +
Sbjct: 64 PSSVGVPWFTKVTLQRFVRFVTTPEVLERSVTLEKEIEQIEDSIQANAAAIAGEAEGNEL 123
Query: 130 GG--------ALSGGVFGTIG--VEQQGNVGPNSSEATKNEXXXXXXXXXXXXKEEIFAL 179
GG ALS T G VE+ VG + KE+ A
Sbjct: 124 GGTWTSQKSTALSKTKGETDGDTVEENSKVGLQRVLENRK---------AALCKEQAMAY 174
Query: 180 LNRAVVSNMSTRDVSDLSSFVQHFGASEFSWLMRCLLLIPDCQ--------PSEVSQQQS 231
RA+V + DL SF FGAS C+ + C+ +++ Q+
Sbjct: 175 A-RALVVGFELDYMDDLFSFADAFGASRLR--EACVNFVDLCKRKNEDRMWVDQITAMQA 231
Query: 232 FP 233
FP
Sbjct: 232 FP 233
>AT1G61100.1 | chr1:22508831-22512122 REVERSE LENGTH=809
Length = 808
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 57/101 (56%), Gaps = 3/101 (2%)
Query: 11 LDSAVFQVSSAQNRYEAIACSKGNTELIASGPFDQLVLHLEDARKFQSCSTAGTFKLSLS 70
LDSA+FQ++ + R++ + E +ASG F+ V HL+ AR S G + +SL+
Sbjct: 7 LDSALFQLTPTRTRFDLVLFCGSKKEKLASGIFEPFVSHLKFARDQIS---KGGYSISLT 63
Query: 71 GNAKGSSWFTKSTIARFLNTINSPDASKSANGILHEISQLE 111
+ SSWFTKST RF+ +N+P + + EI Q+E
Sbjct: 64 PPSSHSSWFTKSTFDRFVRFVNTPAIIERFATLEKEILQIE 104
>AT5G43310.1 | chr5:17379735-17385387 REVERSE LENGTH=1238
Length = 1237
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 59/109 (54%), Gaps = 4/109 (3%)
Query: 5 VASNVELDSAVFQVSSAQNRYEAIACSKGNTELIASGPFDQLVLHLEDAR-KFQSCSTAG 63
+ S+ LDS FQ++ + R + + + G TE IA+G D + HL+ A+ + + +
Sbjct: 1 MKSSTRLDSVAFQLTPTRTRCDLLVTANGKTEKIATGLLDPFLAHLKTAKDQLEKGGYSI 60
Query: 64 TFKLSLSGNAKGSSWFTKSTIARFLNTINSPDASKSANGILHEISQLEE 112
K S NA +WFTK TI RF+ +++P+ + + EI Q++E
Sbjct: 61 ILKPEASDNA---AWFTKGTIERFVRFVSTPEVIERVYTLETEIIQIKE 106
>AT1G72410.2 | chr1:27251535-27256246 REVERSE LENGTH=1271
Length = 1270
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 59/119 (49%), Gaps = 7/119 (5%)
Query: 5 VASNVELDSAVFQVSSAQNRYEAIACSKGNTELIASGPFDQLVLHLEDARKFQSCSTAGT 64
+ S+ LD VF++S ++ E S TE +ASG V HL+ S +
Sbjct: 1 MRSDTVLDYVVFELSPKHSKCELFVSSNEQTEKLASGLIQPFVNHLKVLEAKASPVAQSS 60
Query: 65 FKLSLSGNAKGSSWFTKSTIARFLNTINSPDASKSANGILHEISQLEETRKFHQSLYSK 123
+L + K ++WFTK T+ RF+ +NSP+ + N E+ QLE R +LYS+
Sbjct: 61 IRLEVE---KSNTWFTKRTLERFVQFVNSPETLEKVNTYYSEMLQLEAAR----TLYSQ 112
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.304 0.121 0.329
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 20,465,591
Number of extensions: 834426
Number of successful extensions: 2636
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 2639
Number of HSP's successfully gapped: 8
Length of query: 1073
Length of database: 11,106,569
Length adjustment: 109
Effective length of query: 964
Effective length of database: 8,118,225
Effective search space: 7825968900
Effective search space used: 7825968900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 117 (49.7 bits)