BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0326500 Os03g0326500|AK058426
         (110 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G08570.1  | chr1:2713059-2714312 FORWARD LENGTH=276            111   6e-26
AT2G33270.1  | chr2:14103681-14105204 FORWARD LENGTH=274           84   2e-17
AT5G61440.1  | chr5:24707658-24708684 FORWARD LENGTH=246           70   2e-13

>AT1G08570.1 | chr1:2713059-2714312 FORWARD LENGTH=276
          Length = 275

 Score =  111 bits (278), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 61/113 (53%), Positives = 73/113 (64%), Gaps = 13/113 (11%)

Query: 1   FFRFYRGAQGRLCSFSCTNATIKKFRDALAKHKPDRCSLGPTRGXXXXXXXXXXXNKDLQ 60
           FFRFYRG+QGR+CSFSCTNATIKKFRDALAKH PDRCSLGPT+G           NK+L 
Sbjct: 173 FFRFYRGSQGRVCSFSCTNATIKKFRDALAKHGPDRCSLGPTKGLEEKELVALAANKELN 232

Query: 61  FNYTKKPELVPSGDAAAAQELDRGSTKLSPPAKPL---VKQGSEERSLVSSGR 110
           F YT KP  VP    AA  +        S P+ P+       ++E++LVS+GR
Sbjct: 233 FTYTPKP--VPVEKEAATPD--------SNPSLPVPLPSMSSNDEKTLVSAGR 275



>AT2G33270.1 | chr2:14103681-14105204 FORWARD LENGTH=274
          Length = 273

 Score = 83.6 bits (205), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 36/63 (57%), Positives = 46/63 (73%)

Query: 1   FFRFYRGAQGRLCSFSCTNATIKKFRDALAKHKPDRCSLGPTRGXXXXXXXXXXXNKDLQ 60
           FFRFYRG+ GR+CSFSCTNATI+KF++AL KH  ++CS+G T+G           NKDL 
Sbjct: 169 FFRFYRGSSGRVCSFSCTNATIRKFKEALEKHGREQCSIGETKGLEEKELVAMAANKDLS 228

Query: 61  FNY 63
           F+Y
Sbjct: 229 FDY 231



>AT5G61440.1 | chr5:24707658-24708684 FORWARD LENGTH=246
          Length = 245

 Score = 70.1 bits (170), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 29/44 (65%), Positives = 36/44 (81%)

Query: 1   FFRFYRGAQGRLCSFSCTNATIKKFRDALAKHKPDRCSLGPTRG 44
           FF+FYRGA+G++CSFSCT ATI KF+ AL KH  +RCSLG  +G
Sbjct: 161 FFKFYRGAEGKVCSFSCTIATINKFKKALDKHGSERCSLGDAKG 204



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.316    0.132    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,224,697
Number of extensions: 72269
Number of successful extensions: 169
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 169
Number of HSP's successfully gapped: 3
Length of query: 110
Length of database: 11,106,569
Length adjustment: 79
Effective length of query: 31
Effective length of database: 8,940,705
Effective search space: 277161855
Effective search space used: 277161855
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 104 (44.7 bits)