BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0325600 Os03g0325600|AK063262
(328 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G17810.1 | chr5:5880576-5882602 REVERSE LENGTH=269 116 2e-26
AT3G03660.2 | chr3:889515-892162 REVERSE LENGTH=298 115 3e-26
AT2G33880.1 | chr2:14341639-14343597 REVERSE LENGTH=379 88 6e-18
AT5G45980.1 | chr5:18648921-18650698 FORWARD LENGTH=326 84 1e-16
AT3G18010.1 | chr3:6161155-6163183 REVERSE LENGTH=351 55 4e-08
AT2G01500.1 | chr2:224470-225997 REVERSE LENGTH=272 53 2e-07
AT4G35550.1 | chr4:16875814-16877167 REVERSE LENGTH=269 52 4e-07
AT5G59340.1 | chr5:23933408-23934627 REVERSE LENGTH=261 52 5e-07
AT2G17950.1 | chr2:7809100-7810671 REVERSE LENGTH=293 51 7e-07
AT2G28610.1 | chr2:12262115-12263286 FORWARD LENGTH=245 51 9e-07
>AT5G17810.1 | chr5:5880576-5882602 REVERSE LENGTH=269
Length = 268
Score = 116 bits (290), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 50/55 (90%), Positives = 54/55 (98%)
Query: 37 EPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLERFGAVGDANVFYWF 91
EPVR+RW+PKPEQILILESIFNSG VNPPKDETVRIRK+LE+FGAVGDANVFYWF
Sbjct: 16 EPVRARWSPKPEQILILESIFNSGTVNPPKDETVRIRKMLEKFGAVGDANVFYWF 70
Score = 81.6 bits (200), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 35/60 (58%), Positives = 48/60 (80%)
Query: 267 ITVFINGVPMEMPRGPIDLRAMFGQDVMLVHSTGALLPVNDYGILMQSLQIGESYFLVAR 326
+TVFINGVPME+ +G ID++ MFG D +L+HS+G LP +++G LM SLQ G++YFLV R
Sbjct: 207 MTVFINGVPMEVTKGAIDMKTMFGDDSVLLHSSGLPLPTDEFGFLMHSLQHGQTYFLVPR 266
>AT3G03660.2 | chr3:889515-892162 REVERSE LENGTH=298
Length = 297
Score = 115 bits (288), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 50/55 (90%), Positives = 55/55 (100%)
Query: 37 EPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLERFGAVGDANVFYWF 91
EPVRSRW+PKPEQILILESIF+SGMVNPPK+ETVRIRK+LE+FGAVGDANVFYWF
Sbjct: 28 EPVRSRWSPKPEQILILESIFHSGMVNPPKEETVRIRKMLEKFGAVGDANVFYWF 82
Score = 85.9 bits (211), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 39/66 (59%), Positives = 50/66 (75%)
Query: 261 QLPAATITVFINGVPMEMPRGPIDLRAMFGQDVMLVHSTGALLPVNDYGILMQSLQIGES 320
Q ITVFINGVP E+ RG ID++A FG+D++LVHS+G LP +++G LM SLQ GE+
Sbjct: 230 QYQQGAITVFINGVPTEVTRGGIDMKATFGEDLVLVHSSGVPLPTDEFGFLMHSLQHGEA 289
Query: 321 YFLVAR 326
YFLV R
Sbjct: 290 YFLVPR 295
>AT2G33880.1 | chr2:14341639-14343597 REVERSE LENGTH=379
Length = 378
Score = 88.2 bits (217), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 37/52 (71%), Positives = 43/52 (82%)
Query: 40 RSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLERFGAVGDANVFYWF 91
+ RW PKPEQI ILE+IFNSGMVNPP++E RIR L+ +G VGDANVFYWF
Sbjct: 53 KPRWNPKPEQIRILEAIFNSGMVNPPREEIRRIRAQLQEYGQVGDANVFYWF 104
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 41/60 (68%)
Query: 265 ATITVFINGVPMEMPRGPIDLRAMFGQDVMLVHSTGALLPVNDYGILMQSLQIGESYFLV 324
A I VFIN + +E+ GP ++R FG++V+L++S G + ++YG+ + LQ G SY+L+
Sbjct: 319 ARIRVFINEMELEVSSGPFNVRDAFGEEVVLINSAGQPIVTDEYGVALHPLQHGASYYLI 378
>AT5G45980.1 | chr5:18648921-18650698 FORWARD LENGTH=326
Length = 325
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 35/52 (67%), Positives = 42/52 (80%)
Query: 40 RSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLERFGAVGDANVFYWF 91
+ RW PKPEQI ILESIFNSG +NPP++E RIR L+ +G +GDANVFYWF
Sbjct: 53 KPRWNPKPEQIRILESIFNSGTINPPREEIQRIRIRLQEYGQIGDANVFYWF 104
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 39/58 (67%)
Query: 267 ITVFINGVPMEMPRGPIDLRAMFGQDVMLVHSTGALLPVNDYGILMQSLQIGESYFLV 324
+TVFIN +P+E+ G +++A FG D +L++S G + +++G+ Q LQ G Y+L+
Sbjct: 268 MTVFINEMPIEVVSGLFNVKAAFGNDAVLINSFGQPILTDEFGVTYQPLQNGAIYYLI 325
>AT3G18010.1 | chr3:6161155-6163183 REVERSE LENGTH=351
Length = 350
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 30/53 (56%)
Query: 39 VRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLERFGAVGDANVFYWF 91
V SRW P P+Q+ +LE ++ G P D +I L R+G + NVFYWF
Sbjct: 73 VSSRWNPTPDQLRVLEELYRQGTRTPSADHIQQITAQLRRYGKIEGKNVFYWF 125
>AT2G01500.1 | chr2:224470-225997 REVERSE LENGTH=272
Length = 271
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 29/50 (58%)
Query: 42 RWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLERFGAVGDANVFYWF 91
RW P PEQI LE ++ SG P ++ +I L ++G + NVFYWF
Sbjct: 61 RWNPTPEQITTLEELYRSGTRTPTTEQIQQIASKLRKYGRIEGKNVFYWF 110
>AT4G35550.1 | chr4:16875814-16877167 REVERSE LENGTH=269
Length = 268
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 30/53 (56%)
Query: 39 VRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLERFGAVGDANVFYWF 91
R RWTP P Q+ ILE IF+ G P K + I + L + G + + NV+ WF
Sbjct: 96 ARQRWTPTPVQLQILERIFDQGTGTPSKQKIKDITEELSQHGQIAEQNVYNWF 148
>AT5G59340.1 | chr5:23933408-23934627 REVERSE LENGTH=261
Length = 260
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%)
Query: 41 SRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLERFGAVGDANVFYWF 91
SRW P +QI +LE+++ G+ P D+ +I L +G + NVFYWF
Sbjct: 13 SRWNPTKDQITLLENLYKEGIRTPSADQIQQITGRLRAYGHIEGKNVFYWF 63
>AT2G17950.1 | chr2:7809100-7810671 REVERSE LENGTH=293
Length = 292
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 41 SRWTPKPEQILILESIF-NSGMVNPPKDETVRIRKLLERFGAVGDANVFYWF 91
+RWTP EQI IL+ ++ N+ + +P D+ +I L +FG + NVFYWF
Sbjct: 37 TRWTPTTEQIKILKELYYNNAIRSPTADQIQKITARLRQFGKIEGKNVFYWF 88
>AT2G28610.1 | chr2:12262115-12263286 FORWARD LENGTH=245
Length = 244
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 31/51 (60%)
Query: 41 SRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLERFGAVGDANVFYWF 91
+RW P PEQ++ILE ++ SG+ P + +I L +G + NVFYWF
Sbjct: 7 TRWCPTPEQLMILEEMYRSGIRTPNAVQIQQITAHLAFYGRIEGKNVFYWF 57
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.323 0.139 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,997,095
Number of extensions: 105980
Number of successful extensions: 185
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 185
Number of HSP's successfully gapped: 15
Length of query: 328
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 229
Effective length of database: 8,392,385
Effective search space: 1921856165
Effective search space used: 1921856165
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 112 (47.8 bits)