BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0322800 Os03g0322800|AK101817
(317 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G03610.1 | chr3:869479-871687 FORWARD LENGTH=324 415 e-116
AT1G03620.1 | chr1:904319-906013 REVERSE LENGTH=266 253 7e-68
AT3G60260.1 | chr3:22274303-22276839 FORWARD LENGTH=267 251 5e-67
AT2G44770.1 | chr2:18457817-18459886 FORWARD LENGTH=267 250 6e-67
AT1G67400.1 | chr1:25248099-25250664 REVERSE LENGTH=282 239 1e-63
AT3G43400.1 | chr3:15332136-15333703 FORWARD LENGTH=214 162 3e-40
>AT3G03610.1 | chr3:869479-871687 FORWARD LENGTH=324
Length = 323
Score = 415 bits (1066), Expect = e-116, Method: Compositional matrix adjust.
Identities = 199/323 (61%), Positives = 245/323 (75%), Gaps = 6/323 (1%)
Query: 1 MSMTNLRRRLHHGDVDGRKNEHVDISSVDSLNEPLLGKSSSDTGGSEVYDPRR-QDLWDD 59
M+ LRRRLHHGDVDGRK E D + ++L+EPLLG SS+D +E + R +D+W++
Sbjct: 1 MASATLRRRLHHGDVDGRKYERYDATDSETLSEPLLGSSSTDNSRNEYIEERTLEDIWEE 60
Query: 60 DRKKEQLHWSFLFSNLIAQWAQWLANIIVGSGSLFGRLFPFSLDNQNSS-----PVYLSP 114
+RK++Q+HW+ +FS LIAQWAQW+A I+ GSGSL GR Q + P LS
Sbjct: 61 ERKRQQVHWTLIFSQLIAQWAQWIAKIVFGSGSLVGRFLSLPTFGQIGTGGRLLPPPLSM 120
Query: 115 LQEDRLNTLRSRLQIPFDGSRVEHQDALRQLWRLAYPNRDIPPLKSELWKEMGWQGTDPS 174
LQE+RL ++ R++IPFDGSR+EHQDALRQLWRLAYP R++PPLKSELWKEMGWQGTDPS
Sbjct: 121 LQEERLRNIKRRIEIPFDGSRMEHQDALRQLWRLAYPQRELPPLKSELWKEMGWQGTDPS 180
Query: 175 TDFRGGGFISLENLIFFARNYPGSFQALLNKVQGQRADWEYPFAVAGINISFMLIQMLDL 234
TDFRGGG+ISLENLIFFA+ YP SFQ LL+K G RA+WEYPFAVAGINISFML QMLDL
Sbjct: 181 TDFRGGGYISLENLIFFAKTYPESFQRLLHKQDGTRAEWEYPFAVAGINISFMLAQMLDL 240
Query: 235 QSSVPSSKSGVRFVELLGRDENAFDHLYCIAFRLLDAQWLVKRASYMEFNEVLKSTRTQX 294
QS PS+ +G+RF+ L DE AFD+LYCIAF+++DAQWL +RASYMEFN+VLKSTR Q
Sbjct: 241 QSGKPSTIAGIRFLGFLEEDEMAFDNLYCIAFQMMDAQWLARRASYMEFNDVLKSTRAQL 300
Query: 295 XXXXXXXXXXXXKDLPSYTMLDK 317
DLP++ +L K
Sbjct: 301 ERELALDDVSSITDLPAFNLLYK 323
>AT1G03620.1 | chr1:904319-906013 REVERSE LENGTH=266
Length = 265
Score = 253 bits (647), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 130/234 (55%), Positives = 164/234 (70%), Gaps = 2/234 (0%)
Query: 84 ANIIVGSGSLFGRLFPFSLDNQNSSPVY-LSPLQEDRLNTLRSRLQIPFDGSRVEHQDAL 142
A +VG+ S G LF S Q+ + Y LSPLQE+RL L+ R+ +PFD +R +HQ++L
Sbjct: 30 ATGMVGTRSWIGGLFTRSNRRQDKAVDYTLSPLQEERLQRLQDRMVVPFDETRPDHQESL 89
Query: 143 RQLWRLAYPNRDIPPLKSELWKEMGWQGTDPSTDFRGGGFISLENLIFFARNYPGSFQAL 202
+ LW +A+PN + L +E WKEMGWQG +PSTDFRG GFI+LENL+F AR YP F+ L
Sbjct: 90 KALWNVAFPNVHLTGLVTEQWKEMGWQGPNPSTDFRGCGFIALENLLFSARTYPVCFRRL 149
Query: 203 LNKVQGQRADWEYPFAVAGINISFMLIQMLDLQSS-VPSSKSGVRFVELLGRDENAFDHL 261
L K +G RA WEYPFAVAGINISFMLIQMLDLQ++ P G+ F++LL DE AFD L
Sbjct: 150 LLKQRGDRAKWEYPFAVAGINISFMLIQMLDLQNNPKPKCLPGMNFLKLLEEDERAFDVL 209
Query: 262 YCIAFRLLDAQWLVKRASYMEFNEVLKSTRTQXXXXXXXXXXXXXKDLPSYTML 315
YCIAF ++DAQWL ASYMEFNEVL++TR Q +DLP+Y +L
Sbjct: 210 YCIAFAMMDAQWLAMHASYMEFNEVLQATRNQLERELSLDDIHRIQDLPAYNLL 263
>AT3G60260.1 | chr3:22274303-22276839 FORWARD LENGTH=267
Length = 266
Score = 251 bits (640), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 124/238 (52%), Positives = 162/238 (68%), Gaps = 4/238 (1%)
Query: 84 ANIIVGSGSLFGR-LFPFSLDNQNSSP---VYLSPLQEDRLNTLRSRLQIPFDGSRVEHQ 139
A ++ GS + GR L + ++ P L+P QE+ L L+SR+ + +D S +HQ
Sbjct: 29 AEVVAGSAAWLGRGLSCVCVQGRDGDPRPSFDLTPAQEECLQRLQSRIDVAYDSSIPQHQ 88
Query: 140 DALRQLWRLAYPNRDIPPLKSELWKEMGWQGTDPSTDFRGGGFISLENLIFFARNYPGSF 199
+AL+ LW+LA+P ++ + S+ WKEMGWQG DPSTDFRGGGFISLENL++FAR +P SF
Sbjct: 89 EALKDLWKLAFPEEELHGIVSDQWKEMGWQGKDPSTDFRGGGFISLENLLYFARKFPKSF 148
Query: 200 QALLNKVQGQRADWEYPFAVAGINISFMLIQMLDLQSSVPSSKSGVRFVELLGRDENAFD 259
LL K G R+ WEYPFAVAGINI+FMLIQMLDL++ P S G F+ L +E+AFD
Sbjct: 149 HGLLRKQVGDRSVWEYPFAVAGINITFMLIQMLDLEAVKPRSIVGETFLRFLSVNESAFD 208
Query: 260 HLYCIAFRLLDAQWLVKRASYMEFNEVLKSTRTQXXXXXXXXXXXXXKDLPSYTMLDK 317
LYCIAF+L+D QWL RASYMEFN V+KSTR Q +DLPSY++L +
Sbjct: 209 LLYCIAFKLMDQQWLSMRASYMEFNTVMKSTRRQLEREIMIEDITSLEDLPSYSLLSQ 266
>AT2G44770.1 | chr2:18457817-18459886 FORWARD LENGTH=267
Length = 266
Score = 250 bits (639), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 123/238 (51%), Positives = 163/238 (68%), Gaps = 4/238 (1%)
Query: 84 ANIIVGSGSLFGRLFPFSL----DNQNSSPVYLSPLQEDRLNTLRSRLQIPFDGSRVEHQ 139
A + GS + GR D+ +S L+P QE+ L +L++R+ + +D + HQ
Sbjct: 29 AEAVPGSAAWLGRGLSCVCAQRRDSDANSTFDLTPAQEECLQSLQNRIDVAYDSTIPLHQ 88
Query: 140 DALRQLWRLAYPNRDIPPLKSELWKEMGWQGTDPSTDFRGGGFISLENLIFFARNYPGSF 199
+ALR+LW+L++P ++ L SE WKEMGWQG DPSTDFRGGGFISLENL++FARN+ SF
Sbjct: 89 EALRELWKLSFPEEELHGLISEQWKEMGWQGKDPSTDFRGGGFISLENLLYFARNFQKSF 148
Query: 200 QALLNKVQGQRADWEYPFAVAGINISFMLIQMLDLQSSVPSSKSGVRFVELLGRDENAFD 259
Q LL K G R+ WEYPFAVAGIN++FMLIQMLDL++ P + G F++ L +E+AFD
Sbjct: 149 QDLLRKQVGDRSVWEYPFAVAGINLTFMLIQMLDLEAVKPRTIVGATFLKFLSENESAFD 208
Query: 260 HLYCIAFRLLDAQWLVKRASYMEFNEVLKSTRTQXXXXXXXXXXXXXKDLPSYTMLDK 317
LYCIAF+L+D QWL RASYMEFN V+KSTR Q +DLPSY +L++
Sbjct: 209 LLYCIAFKLMDQQWLSMRASYMEFNTVMKSTRRQLERELMLEDIMHLEDLPSYALLNQ 266
>AT1G67400.1 | chr1:25248099-25250664 REVERSE LENGTH=282
Length = 281
Score = 239 bits (610), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 113/204 (55%), Positives = 147/204 (72%)
Query: 112 LSPLQEDRLNTLRSRLQIPFDGSRVEHQDALRQLWRLAYPNRDIPPLKSELWKEMGWQGT 171
L+PLQE+RL LR R++ +D SR +HQDALR LW YP+ + L S+ WK MGWQG
Sbjct: 77 LTPLQEERLKRLRKRMKNYYDASRPDHQDALRALWSATYPDEKLQDLISDQWKNMGWQGK 136
Query: 172 DPSTDFRGGGFISLENLIFFARNYPGSFQALLNKVQGQRADWEYPFAVAGINISFMLIQM 231
DPSTDFRG GFISLENL+FFA+ + SFQ LLNK G+RA WEYPFAVAG+NI+FM++QM
Sbjct: 137 DPSTDFRGAGFISLENLLFFAKTFSTSFQRLLNKQGGKRAAWEYPFAVAGVNITFMIMQM 196
Query: 232 LDLQSSVPSSKSGVRFVELLGRDENAFDHLYCIAFRLLDAQWLVKRASYMEFNEVLKSTR 291
LDL++S P S + F+++L E AFD LYC+AF ++D QWL K A+YMEFN+VL+ TR
Sbjct: 197 LDLEASKPRSFIRLVFLQMLSESEWAFDLLYCVAFVVMDKQWLDKNATYMEFNDVLRCTR 256
Query: 292 TQXXXXXXXXXXXXXKDLPSYTML 315
Q +D+PS+++L
Sbjct: 257 GQLERELMMDDVFRIEDMPSFSLL 280
>AT3G43400.1 | chr3:15332136-15333703 FORWARD LENGTH=214
Length = 213
Score = 162 bits (409), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 81/149 (54%), Positives = 104/149 (69%), Gaps = 10/149 (6%)
Query: 146 WRL------AYPNRDIPPLKSELWKEMGWQGTDPSTDFRGGGFISLENLIFFARNYPGSF 199
WR+ Y + + L S+ WK MGWQ DPSTDFRG GFISLENL FFA+ +F
Sbjct: 63 WRIKKSLTSTYADEKLQDLISDQWKNMGWQRKDPSTDFRGDGFISLENLRFFAK----TF 118
Query: 200 QALLNKVQGQRADWEYPFAVAGINISFMLIQMLDLQSSVPSSKSGVRFVELLGRDENAFD 259
LL K G+RA WEYPFAVAG+NI+FM++QMLDL++S P S + F+++L E AF
Sbjct: 119 SRLLKKQGGKRAAWEYPFAVAGVNITFMIMQMLDLEASKPRSFIRLVFLQMLSESEWAFG 178
Query: 260 HLYCIAFRLLDAQWLVKRASYMEFNEVLK 288
LYC+AF ++D QWL K A+YMEFN+VL+
Sbjct: 179 LLYCVAFVVMDKQWLDKNATYMEFNDVLR 207
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.136 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,186,059
Number of extensions: 311782
Number of successful extensions: 682
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 678
Number of HSP's successfully gapped: 6
Length of query: 317
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 218
Effective length of database: 8,392,385
Effective search space: 1829539930
Effective search space used: 1829539930
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 112 (47.8 bits)