BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0322500 Os03g0322500|AK121029
         (129 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G56490.1  | chr3:20941532-20943129 FORWARD LENGTH=148          233   2e-62
AT1G31160.1  | chr1:11122880-11124106 REVERSE LENGTH=188          182   6e-47
AT5G48545.1  | chr5:19676228-19677945 FORWARD LENGTH=198           52   6e-08
AT4G16566.1  | chr4:9334873-9335884 REVERSE LENGTH=147             47   2e-06

>AT3G56490.1 | chr3:20941532-20943129 FORWARD LENGTH=148
          Length = 147

 Score =  233 bits (595), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 107/129 (82%), Positives = 120/129 (93%)

Query: 1   MASEKEAALAAVPNDNPTIFDKIIKKEIPSTVVFDDEKVLAFRDINPQAPTHIVIIPKVK 60
           MASEKEAALAA P+D+PTIFDKII KEIPSTVVF+D+KVLAFRDI PQ P HI++IPKV+
Sbjct: 19  MASEKEAALAATPSDSPTIFDKIISKEIPSTVVFEDDKVLAFRDITPQGPVHILLIPKVR 78

Query: 61  DGLTGLSKAEERHVEILGYLLYVAKVVAKQEGLEDGYRIVINDGPSGCQSVYHIHVHLLG 120
           DGLTGLSKAEERH++ILG LLY AK+VAKQEGL +G+RIVINDGP GCQSVYHIHVHL+G
Sbjct: 79  DGLTGLSKAEERHIDILGRLLYTAKLVAKQEGLAEGFRIVINDGPQGCQSVYHIHVHLIG 138

Query: 121 GRQMNWPPG 129
           GRQMNWPPG
Sbjct: 139 GRQMNWPPG 147



>AT1G31160.1 | chr1:11122880-11124106 REVERSE LENGTH=188
          Length = 187

 Score =  182 bits (461), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 78/113 (69%), Positives = 99/113 (87%)

Query: 17  PTIFDKIIKKEIPSTVVFDDEKVLAFRDINPQAPTHIVIIPKVKDGLTGLSKAEERHVEI 76
           PTIFDKII KEIPS +V++DE VLAFRDINPQAP H+++IPK++DGLT L KAE RHVE+
Sbjct: 75  PTIFDKIIAKEIPSDIVYEDENVLAFRDINPQAPVHVLVIPKLRDGLTSLGKAEPRHVEV 134

Query: 77  LGYLLYVAKVVAKQEGLEDGYRIVINDGPSGCQSVYHIHVHLLGGRQMNWPPG 129
           LG LL+ +K+VA++EG+ DG+R+VIN+G   CQSVYH+H+H+LGGRQM WPPG
Sbjct: 135 LGQLLHASKIVAEKEGILDGFRVVINNGVEACQSVYHLHLHVLGGRQMKWPPG 187



>AT5G48545.1 | chr5:19676228-19677945 FORWARD LENGTH=198
          Length = 197

 Score = 52.4 bits (124), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 28/115 (24%), Positives = 57/115 (49%), Gaps = 10/115 (8%)

Query: 16  NPTIFDKIIKKEIPSTVVFDDEKVLAFRDINPQAPTHIVIIPKVKDGLTGLSKAEERHVE 75
           N  +F KII+ E P   +++D+  L   D NP +  H +IIPK+          EE    
Sbjct: 48  NDCVFCKIIRGESPCLKLYEDDMCLCILDTNPLSHGHSLIIPKLH-----YPTLEETPPS 102

Query: 76  ILGYLL----YVAKVVAKQEGLEDGYRIVINDGPSGCQSVYHIHVHLLGGRQMNW 126
           ++  +      ++  + K  G  D + +++N+G +  Q ++H H+H++  ++ + 
Sbjct: 103 VVAAMCSKVPLISNAIVKATG-SDSFNLLVNNGAAAGQVIFHTHIHIIPRKERDC 156



>AT4G16566.1 | chr4:9334873-9335884 REVERSE LENGTH=147
          Length = 146

 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/106 (24%), Positives = 53/106 (50%), Gaps = 2/106 (1%)

Query: 15  DNPTIFDKIIKKEIPSTVVFDDEKVLAFRDINPQAPTHIVIIPKVKDGLTGLSKAEERHV 74
           +   IF +I++    + ++  DEKV+AF+DI P A  H ++IPK         +  +   
Sbjct: 5   NQACIFCEIVRNPTTTRLLHTDEKVIAFQDIKPAAQRHYLVIPKEHIPTVNDLQRRDEDY 64

Query: 75  EILGYLLYVAKVVAKQEGLEDGYRIVINDGPSGCQSVYHIHVHLLG 120
            ++ ++L V + + +++  +  +R   +  P    SV H+H+H   
Sbjct: 65  SLVRHMLSVGQQLLQKDAPQSIHRFGFHQPPFN--SVDHLHLHCFA 108



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.138    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,985,103
Number of extensions: 118588
Number of successful extensions: 245
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 244
Number of HSP's successfully gapped: 4
Length of query: 129
Length of database: 11,106,569
Length adjustment: 87
Effective length of query: 42
Effective length of database: 8,721,377
Effective search space: 366297834
Effective search space used: 366297834
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 106 (45.4 bits)