BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0322200 Os03g0322200|AK062978
         (114 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G13227.1  | chr3:4258028-4258363 FORWARD LENGTH=112             49   6e-07
AT3G56500.1  | chr3:20943638-20943970 FORWARD LENGTH=111           47   2e-06

>AT3G13227.1 | chr3:4258028-4258363 FORWARD LENGTH=112
          Length = 111

 Score = 48.9 bits (115), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 18/23 (78%), Positives = 22/23 (95%)

Query: 59 QACVCAPTTHPGSFRCKHHRQNA 81
          Q C+CAPTTHPGSFRC++HR+NA
Sbjct: 63 QNCLCAPTTHPGSFRCRYHRRNA 85



>AT3G56500.1 | chr3:20943638-20943970 FORWARD LENGTH=111
          Length = 110

 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 29/51 (56%), Gaps = 3/51 (5%)

Query: 35 IRKSWSNDSLSSYXXXXXXXXXXXQACVCAPTTHPGSFRCKHHRQNASNLG 85
          +RKSWS DSL                C+CAPT H GSFRC+ HR +A++ G
Sbjct: 42 MRKSWSTDSLGLLSQSNRLGKT---VCICAPTKHEGSFRCRLHRSSATSHG 89



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.126    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,775,753
Number of extensions: 47246
Number of successful extensions: 85
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 84
Number of HSP's successfully gapped: 2
Length of query: 114
Length of database: 11,106,569
Length adjustment: 83
Effective length of query: 31
Effective length of database: 8,831,041
Effective search space: 273762271
Effective search space used: 273762271
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 104 (44.7 bits)