BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0321400 Os03g0321400|AK059138
(83 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G22200.1 | chr1:7837857-7840602 REVERSE LENGTH=387 121 8e-29
AT1G36050.1 | chr1:13450467-13453683 FORWARD LENGTH=490 116 2e-27
AT4G27080.2 | chr4:13589156-13593335 FORWARD LENGTH=533 72 8e-14
AT3G22290.1 | chr3:7882082-7885260 FORWARD LENGTH=355 71 1e-13
AT3G20560.1 | chr3:7182182-7186390 FORWARD LENGTH=484 67 2e-12
AT1G50950.1 | chr1:18880465-18884043 FORWARD LENGTH=485 65 7e-12
>AT1G22200.1 | chr1:7837857-7840602 REVERSE LENGTH=387
Length = 386
Score = 121 bits (303), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 57/82 (69%), Positives = 68/82 (82%), Gaps = 1/82 (1%)
Query: 1 QFSVTEHFRE-AIGYPRPPPGVYFFYEFSPIKVDFTEENTSLLHFLTNICAIVGGIFTVA 59
QFSVTEHF+ G + PPGV+F+Y+ SPIKV F E++ LHFLTN+CAIVGGIFTV+
Sbjct: 303 QFSVTEHFQNMEAGRMQSPPGVFFYYDLSPIKVIFEEQHVEFLHFLTNVCAIVGGIFTVS 362
Query: 60 GIIDSFVYHGHRAIKKKMEIGK 81
GI+DSF+YHG RAIKKKMEIGK
Sbjct: 363 GIVDSFIYHGQRAIKKKMEIGK 384
>AT1G36050.1 | chr1:13450467-13453683 FORWARD LENGTH=490
Length = 489
Score = 116 bits (291), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 55/80 (68%), Positives = 67/80 (83%), Gaps = 1/80 (1%)
Query: 1 QFSVTEHFREA-IGYPRPPPGVYFFYEFSPIKVDFTEENTSLLHFLTNICAIVGGIFTVA 59
QFSVTEH + + G + PGV+FFY+ SPIKV FTEE+ S LHFLTN+CAIVGG+FTV+
Sbjct: 303 QFSVTEHVKSSEAGQLQSLPGVFFFYDLSPIKVTFTEEHISFLHFLTNVCAIVGGVFTVS 362
Query: 60 GIIDSFVYHGHRAIKKKMEI 79
GIID+F+YHG +AIKKKMEI
Sbjct: 363 GIIDAFIYHGQKAIKKKMEI 382
>AT4G27080.2 | chr4:13589156-13593335 FORWARD LENGTH=533
Length = 532
Score = 71.6 bits (174), Expect = 8e-14, Method: Composition-based stats.
Identities = 32/63 (50%), Positives = 46/63 (73%), Gaps = 1/63 (1%)
Query: 19 PGVYFFYEFSPIKVDFTEENTSLLHFLTNICAIVGGIFTVAGIIDSFVYHGHRAIKKKME 78
P F +E SP++V TE + S HF+TN+CAI+GG+FTVAGI+DS ++H + KK+E
Sbjct: 469 PVAKFHFELSPMQVLITENSKSFSHFITNVCAIIGGVFTVAGILDSILHHS-MTLMKKIE 527
Query: 79 IGK 81
+GK
Sbjct: 528 LGK 530
>AT3G22290.1 | chr3:7882082-7885260 FORWARD LENGTH=355
Length = 354
Score = 71.2 bits (173), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 46/76 (60%)
Query: 1 QFSVTEHFREAIGYPRPPPGVYFFYEFSPIKVDFTEENTSLLHFLTNICAIVGGIFTVAG 60
Q+SVTE+F + R P VYF Y+ SPI V EE S LH +T +CA++GG F + G
Sbjct: 274 QYSVTEYFTPMTEFDRTWPAVYFLYDLSPITVTIKEERRSFLHLITRLCAVLGGTFALTG 333
Query: 61 IIDSFVYHGHRAIKKK 76
++D +++ + KK
Sbjct: 334 MLDRWMFRFIESFNKK 349
>AT3G20560.1 | chr3:7182182-7186390 FORWARD LENGTH=484
Length = 483
Score = 66.6 bits (161), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 45/63 (71%), Gaps = 1/63 (1%)
Query: 19 PGVYFFYEFSPIKVDFTEENTSLLHFLTNICAIVGGIFTVAGIIDSFVYHGHRAIKKKME 78
P F +E SP+++ TE S HF+TN+CAI+GG+FTVAGI+DS ++H + KK+E
Sbjct: 420 PVAKFHFELSPMQILITENPKSFSHFITNLCAIIGGVFTVAGILDS-IFHNTVRLVKKVE 478
Query: 79 IGK 81
+GK
Sbjct: 479 LGK 481
>AT1G50950.1 | chr1:18880465-18884043 FORWARD LENGTH=485
Length = 484
Score = 65.1 bits (157), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 44/63 (69%), Gaps = 1/63 (1%)
Query: 19 PGVYFFYEFSPIKVDFTEENTSLLHFLTNICAIVGGIFTVAGIIDSFVYHGHRAIKKKME 78
P F +E SP++V +E S HF+TN+CAI+GG+FTVAGI+DS + R + KK+E
Sbjct: 421 PEAKFHFELSPMQVLISENPKSFSHFITNVCAIIGGVFTVAGILDSIFQNTVRMV-KKIE 479
Query: 79 IGK 81
+GK
Sbjct: 480 LGK 482
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.327 0.146 0.453
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,020,348
Number of extensions: 74004
Number of successful extensions: 183
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 182
Number of HSP's successfully gapped: 6
Length of query: 83
Length of database: 11,106,569
Length adjustment: 54
Effective length of query: 29
Effective length of database: 9,626,105
Effective search space: 279157045
Effective search space used: 279157045
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 104 (44.7 bits)