BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0311300 Os03g0311300|AK065271
(100 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G56500.1 | chr1:21159775-21167092 FORWARD LENGTH=1056 122 4e-29
AT3G14860.2 | chr3:4998591-5000894 REVERSE LENGTH=494 50 3e-07
AT1G70280.2 | chr1:26466086-26468471 REVERSE LENGTH=510 46 3e-06
>AT1G56500.1 | chr1:21159775-21167092 FORWARD LENGTH=1056
Length = 1055
Score = 122 bits (306), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 56/85 (65%), Positives = 70/85 (82%)
Query: 9 IEFGDHDGTGSDVLLQHPLGVVYASDNQIYVADSYNHKIKRLDPVTRKVTTIAGTGRAGY 68
+FGD+DG G++VLLQHPLGV+ A+D QIY+ DSYNHKIK+LDPVT++V T+AGTG+AG+
Sbjct: 788 FKFGDNDGVGAEVLLQHPLGVLCANDGQIYLTDSYNHKIKKLDPVTKRVVTLAGTGKAGF 847
Query: 69 KDGPALSAQLSEPAGLVEVGDGNLF 93
KDG AQLSEPAGL +G LF
Sbjct: 848 KDGKVKGAQLSEPAGLAITENGRLF 872
Score = 48.5 bits (114), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 10 EFGDHDGTGSDVLLQHPLGVVY-ASDNQIYVADSYNHKIKRLDPVTRKVTTIAGTGRAG- 67
E G DG+ D P G+ Y A N +YVAD+ NH ++ +D V +V T+AG G G
Sbjct: 609 EEGFQDGSFEDAAFNRPQGLAYNAKKNLLYVADTENHALREIDFVNERVQTLAGNGTKGS 668
Query: 68 -YKDGPALSAQL 78
Y+ G + QL
Sbjct: 669 DYQGGRKGTKQL 680
>AT3G14860.2 | chr3:4998591-5000894 REVERSE LENGTH=494
Length = 493
Score = 49.7 bits (117), Expect = 3e-07, Method: Composition-based stats.
Identities = 30/78 (38%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Query: 12 GDHDGTGSDVLLQHPLGVVYASDNQIYVADSYNHKIKRLDPVTRKVTTIAG--TGRAGYK 69
G DG S+ HP GV +YVAD+ N I+++ VTTIAG + AGY+
Sbjct: 138 GHADGKPSEARFNHPRGVTMDDKGNVYVADTLNLAIRKIG--DSGVTTIAGGKSNIAGYR 195
Query: 70 DGPALSAQLSEPAGLVEV 87
DGP+ A+ S +V V
Sbjct: 196 DGPSEDAKFSNDFDVVYV 213
>AT1G70280.2 | chr1:26466086-26468471 REVERSE LENGTH=510
Length = 509
Score = 46.2 bits (108), Expect = 3e-06, Method: Composition-based stats.
Identities = 32/92 (34%), Positives = 46/92 (50%), Gaps = 9/92 (9%)
Query: 12 GDHDGTGSDVLLQHPLGVVYASDNQIYVADSYNHKIKRLDPVTRKVTTIAG---TGRAGY 68
G DG D L HP G+ IYVAD+ N+ I+++ VTTIAG G+
Sbjct: 131 GHVDGRLRDAKLNHPKGLTVDDRGNIYVADTVNNAIRKIS--EGGVTTIAGGKTVRNGGH 188
Query: 69 KDGPALSAQLSEPAGLVEVGDGNLFPCAVLLV 100
DGP+ A+ S +V VG C++L++
Sbjct: 189 VDGPSEDAKFSNDFDVVYVGSS----CSLLVI 216
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.139 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,415,959
Number of extensions: 90396
Number of successful extensions: 194
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 195
Number of HSP's successfully gapped: 4
Length of query: 100
Length of database: 11,106,569
Length adjustment: 70
Effective length of query: 30
Effective length of database: 9,187,449
Effective search space: 275623470
Effective search space used: 275623470
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 104 (44.7 bits)