BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0302500 Os03g0302500|AK106296
(120 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G47480.1 | chr2:19484207-19484539 REVERSE LENGTH=111 70 2e-13
AT2G19460.1 | chr2:8431581-8431931 FORWARD LENGTH=117 66 4e-12
AT3G05725.1 | chr3:1692548-1693153 FORWARD LENGTH=125 65 8e-12
AT5G11970.1 | chr5:3863289-3863606 REVERSE LENGTH=106 64 1e-11
AT3G62640.1 | chr3:23166511-23166843 REVERSE LENGTH=111 62 5e-11
AT3G13910.1 | chr3:4591124-4591432 REVERSE LENGTH=103 57 2e-09
AT4G09890.1 | chr4:6218501-6218764 FORWARD LENGTH=88 54 2e-08
AT1G72720.1 | chr1:27376903-27377286 REVERSE LENGTH=128 53 4e-08
>AT2G47480.1 | chr2:19484207-19484539 REVERSE LENGTH=111
Length = 110
Score = 70.5 bits (171), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 29/44 (65%), Positives = 38/44 (86%)
Query: 76 FSDPEMKRRRRVASYKAYSVEGKVKSSLRRGFRWIKAKCSELIH 119
SD EMKR++R+A YKAY+VEGKVKS+L+ GFRWIK KC +++H
Sbjct: 65 LSDAEMKRKKRIARYKAYTVEGKVKSTLKNGFRWIKNKCCQIVH 108
>AT2G19460.1 | chr2:8431581-8431931 FORWARD LENGTH=117
Length = 116
Score = 65.9 bits (159), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 39/46 (84%)
Query: 74 WCFSDPEMKRRRRVASYKAYSVEGKVKSSLRRGFRWIKAKCSELIH 119
W F DP+++R++RV SY+AY+VEGK+K S R+ F+WIK KC++L++
Sbjct: 71 WGFVDPDLQRKKRVVSYRAYTVEGKLKGSFRKSFKWIKDKCNKLLN 116
>AT3G05725.1 | chr3:1692548-1693153 FORWARD LENGTH=125
Length = 124
Score = 65.1 bits (157), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 27/45 (60%), Positives = 39/45 (86%)
Query: 76 FSDPEMKRRRRVASYKAYSVEGKVKSSLRRGFRWIKAKCSELIHG 120
++DPE+KR+RRVA YK YS EGK+K +LR+ ++WIK +CS++IHG
Sbjct: 79 WNDPEIKRKRRVAKYKLYSAEGKMKITLRKSYKWIKIQCSKIIHG 123
>AT5G11970.1 | chr5:3863289-3863606 REVERSE LENGTH=106
Length = 105
Score = 64.3 bits (155), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 38/48 (79%)
Query: 73 AWCFSDPEMKRRRRVASYKAYSVEGKVKSSLRRGFRWIKAKCSELIHG 120
+W +DPE++R++RVASYK Y VEGKVK S R FRW+K + +++++G
Sbjct: 56 SWGITDPELQRKKRVASYKMYGVEGKVKGSFRNSFRWLKQRYTQVVYG 103
>AT3G62640.1 | chr3:23166511-23166843 REVERSE LENGTH=111
Length = 110
Score = 62.4 bits (150), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 38/49 (77%)
Query: 72 SAWCFSDPEMKRRRRVASYKAYSVEGKVKSSLRRGFRWIKAKCSELIHG 120
+ W D E KR++R+A+YK Y++EGKVKS++++GF WIK + S +IHG
Sbjct: 62 TPWRLIDAETKRKKRIATYKTYALEGKVKSTVKKGFHWIKDRYSHIIHG 110
>AT3G13910.1 | chr3:4591124-4591432 REVERSE LENGTH=103
Length = 102
Score = 57.0 bits (136), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 24/39 (61%), Positives = 31/39 (79%)
Query: 73 AWCFSDPEMKRRRRVASYKAYSVEGKVKSSLRRGFRWIK 111
+W FSDPE +R+RRVA YK YSVE K+K S+R+ F+W K
Sbjct: 58 SWSFSDPESRRKRRVAGYKVYSVEQKMKGSIRKSFKWFK 96
>AT4G09890.1 | chr4:6218501-6218764 FORWARD LENGTH=88
Length = 87
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 31/39 (79%)
Query: 77 SDPEMKRRRRVASYKAYSVEGKVKSSLRRGFRWIKAKCS 115
+DPEMKR++RVASY ++ E K+KS+L+ F+WIK K S
Sbjct: 39 TDPEMKRKKRVASYNLFATEEKLKSTLKNSFKWIKNKFS 77
>AT1G72720.1 | chr1:27376903-27377286 REVERSE LENGTH=128
Length = 127
Score = 52.8 bits (125), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 32/43 (74%)
Query: 78 DPEMKRRRRVASYKAYSVEGKVKSSLRRGFRWIKAKCSELIHG 120
+ E++R++RVASY Y VEG+VK S+++ F+W K CS ++G
Sbjct: 83 EAEIQRKKRVASYNVYGVEGRVKGSMKKSFKWFKETCSNAVYG 125
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.323 0.138 0.451
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,724,717
Number of extensions: 36068
Number of successful extensions: 80
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 80
Number of HSP's successfully gapped: 8
Length of query: 120
Length of database: 11,106,569
Length adjustment: 86
Effective length of query: 34
Effective length of database: 8,748,793
Effective search space: 297458962
Effective search space used: 297458962
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 105 (45.1 bits)