BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0296700 Os03g0296700|AK067332
         (264 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G40316.1  | chr2:16836355-16838688 FORWARD LENGTH=277          220   5e-58

>AT2G40316.1 | chr2:16836355-16838688 FORWARD LENGTH=277
          Length = 276

 Score =  220 bits (561), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 106/225 (47%), Positives = 140/225 (62%), Gaps = 4/225 (1%)

Query: 36  CEFSVARGGKLYSFSLASPTTAHRHGVLSEDGFYKVAVNNSVLWFQLCDQMIFNFDPPVC 95
           CEFS     K++ F+LAS    + HGVLSEDGFYKV  N+SVLWFQLCD +IFN DPP C
Sbjct: 26  CEFSFTGRNKVFHFNLASSIRNYPHGVLSEDGFYKVEANSSVLWFQLCDVLIFNHDPPRC 85

Query: 96  LNCEDCGGPQRCGTQCSALVSNNRGGYDVCTTIGRASKSHISLIDDINPQKGVVVKMFS- 154
           + CEDCGGP  CGT CSALVS N  GYDVCT++G AS + + +ID  +P KGV+V+M + 
Sbjct: 86  VGCEDCGGPSHCGTSCSALVSENVRGYDVCTSLGHASSTKVDIIDKEDPGKGVIVQMSTG 145

Query: 155 ---SKCSISVYIYCDSTVAHVSDQFVLSGSCDYATTLRHPSGCAQSMSASGNGWGWLATS 211
                CS+SV + C  T          SG+C YAT LRHP+GCA ++S   +GWGW +T 
Sbjct: 146 NRNQNCSLSVSVICQKTKVDGPLTLAKSGTCQYATQLRHPAGCAAAISGHSSGWGWFSTL 205

Query: 212 FVTXXXXXXXXXXXXXXXXXXFLGIHSVEAIPNLEFWISLPQTIK 256
            +                    LGI  ++ IPN+++W ++P +I+
Sbjct: 206 LIIILCLFGAYLVGGAVYRYFSLGIRGIDVIPNMDYWATVPHSIQ 250



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.323    0.137    0.449 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,981,945
Number of extensions: 235309
Number of successful extensions: 598
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 596
Number of HSP's successfully gapped: 1
Length of query: 264
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 167
Effective length of database: 8,447,217
Effective search space: 1410685239
Effective search space used: 1410685239
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 111 (47.4 bits)