BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0295800 Os03g0295800|AK071633
(265 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G07080.1 | chr1:2170069-2171861 FORWARD LENGTH=266 243 9e-65
AT4G12900.1 | chr4:7548820-7549946 FORWARD LENGTH=232 180 6e-46
AT5G01580.1 | chr5:222760-223852 REVERSE LENGTH=234 179 1e-45
AT4G12890.1 | chr4:7546411-7547476 FORWARD LENGTH=233 179 1e-45
AT4G12960.2 | chr4:7583301-7584412 FORWARD LENGTH=244 150 1e-36
AT4G12870.1 | chr4:7542285-7543421 FORWARD LENGTH=230 149 2e-36
>AT1G07080.1 | chr1:2170069-2171861 FORWARD LENGTH=266
Length = 265
Score = 243 bits (619), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 113/177 (63%), Positives = 133/177 (75%), Gaps = 1/177 (0%)
Query: 44 YYETLCPYCSRFIVNHLAGIFEDGIVDAVDLRLVPYGNAHVVGANNTISCQHGSEECFLN 103
YYE+LCPYCS FIVNHLA +FED ++ VDL L P+GN + N T CQHG+ ECFL+
Sbjct: 44 YYESLCPYCSSFIVNHLAKLFEDDLISIVDLHLSPWGNTKLRSDNVTAVCQHGAFECFLD 103
Query: 104 TVEACAIDAWPDLRVHFRFIYCVEDLVVNHKQREWESCFGKLNLDPKPVTDCYKGERGHQ 163
TVEACAIDAWP + HF FIYCVE LV HK +WE+C+ KLNL+ KPV DC G++
Sbjct: 104 TVEACAIDAWPKVSDHFPFIYCVEKLVTEHKYDKWETCYEKLNLNSKPVADCLSSGHGNE 163
Query: 164 LSLKYGRQTDALQPPHKYVPWVVVDGQPLYEDYENFEAYICKAYKGHP-PKVCEGLA 219
L+L Y +T+ALQPPHKYVPWVVVDGQPLYEDYENF +YICKAYKG+ P C A
Sbjct: 164 LALHYAAETNALQPPHKYVPWVVVDGQPLYEDYENFISYICKAYKGNKVPGACTKYA 220
>AT4G12900.1 | chr4:7548820-7549946 FORWARD LENGTH=232
Length = 231
Score = 180 bits (457), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 91/196 (46%), Positives = 120/196 (61%), Gaps = 12/196 (6%)
Query: 44 YYETLCPYCSRFIVNHLAGIFEDGIVDAVDLRLVPYGNAHVVGANNTISCQHGSEECFLN 103
YYE+LCP C FIV+HL IF + DL+L+P+GNAHV + T++CQHG EEC LN
Sbjct: 42 YYESLCPSCQNFIVHHLGKIFNTDLHTITDLKLIPFGNAHV-SDDLTVTCQHGEEECKLN 100
Query: 104 TVEACAIDAWPDLRVHFRFIYCVEDLVVNHKQREWESCFGKLNLDPKPVTDCYKGERGHQ 163
+EACAI WP+ R+H++FI CVE WESC K K + DCY G+ +
Sbjct: 101 ALEACAIRTWPNQRLHYKFIRCVET-----NTNAWESCVKKYG-GEKAINDCYNGDLSKE 154
Query: 164 LSLKYGRQTDALQPPHKYVPWVVVDGQPLYEDYENFEAYICKAYKGHP--PKVCEGLARP 221
L L Y QT +L+P HKYVPW+ ++G+PLYE+ +F +CKAYKG PK+C
Sbjct: 155 LILGYANQTLSLKPEHKYVPWMTLNGEPLYENIGDFVDLVCKAYKGKAALPKLCYSSVLS 214
Query: 222 PTPTVLE---VAEAVN 234
+LE V EA+N
Sbjct: 215 QRTMMLEFSYVDEAIN 230
>AT5G01580.1 | chr5:222760-223852 REVERSE LENGTH=234
Length = 233
Score = 179 bits (455), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 83/176 (47%), Positives = 113/176 (64%), Gaps = 3/176 (1%)
Query: 44 YYETLCPYCSRFIVNHLAGIFEDGIVDAVDLRLVPYGNAHVVGANNTISCQHGSEECFLN 103
YYE LCP+C+ FIVN L IFE G++ ++DL+LVP+GNA + + TI CQHG EC LN
Sbjct: 32 YYEALCPFCAEFIVNRLPKIFETGLISSIDLQLVPWGNA-AIRPDGTILCQHGEAECALN 90
Query: 104 TVEACAIDAWPDLRVHFRFIYCVEDLVVNHKQREWESCFGKLNLDPKPVTDCYKGERGHQ 163
+ ACAI+A+PD+ HF +IYC E LV+ +K +W C + L + DCY G+Q
Sbjct: 91 AIHACAINAYPDVMKHFGYIYCTEQLVLENKLEKWADCLEMVGLS-RAAVDCYINGYGNQ 149
Query: 164 LSLKYGRQTDALQPPHKYVPWVVVDGQPLYEDYENFEAYICKAY-KGHPPKVCEGL 218
L +Y +T L P H++VPWVVV+ PL E+Y+NF Y+C AY P+ C L
Sbjct: 150 LEQRYAEETSELYPAHRFVPWVVVNNLPLQENYQNFVMYVCNAYGSNQVPEACRIL 205
>AT4G12890.1 | chr4:7546411-7547476 FORWARD LENGTH=233
Length = 232
Score = 179 bits (454), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 85/175 (48%), Positives = 114/175 (65%), Gaps = 8/175 (4%)
Query: 44 YYETLCPYCSRFIVNHLAGIFEDGIVDAVDLRLVPYGNAHVVGANNTISCQHGSEECFLN 103
YYE+LCPYC FIV+ L IF+ ++ DL+LVP+GNAH+ N TI+CQHG EEC LN
Sbjct: 44 YYESLCPYCQNFIVDDLGKIFDSDLLKITDLKLVPFGNAHI-SNNLTITCQHGEEECKLN 102
Query: 104 TVEACAIDAWPDLRVHFRFIYCVEDLVVNHKQREWESCFGKLNLDPKPVTDCYKGERGHQ 163
+EAC I PD ++ ++FI CVE EWESC K + K + DCY G+ +
Sbjct: 103 ALEACGIRTLPDPKLQYKFIRCVE-----KDTNEWESCVKKSGRE-KAINDCYNGDLSQK 156
Query: 164 LSLKYGRQTDALQPPHKYVPWVVVDGQPLYEDYENFEAYICKAYKGHP-PKVCEG 217
L L Y + T +L+P H+YVPWV ++G+PLY++Y N A +CKAYKG PK+C
Sbjct: 157 LILGYAKLTSSLKPKHEYVPWVTLNGKPLYDNYHNLVAQVCKAYKGKDLPKLCSS 211
>AT4G12960.2 | chr4:7583301-7584412 FORWARD LENGTH=244
Length = 243
Score = 150 bits (378), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 86/214 (40%), Positives = 116/214 (54%), Gaps = 26/214 (12%)
Query: 44 YYETLCPYCSRFIVNHLAGIFEDGIVDAVDLRLVPYGNAHVVGANNTISCQHGSEECFLN 103
YYE+LCP C FIV+ L IF+ + DL+L P+GNA + N T++CQHG EEC LN
Sbjct: 37 YYESLCPGCQEFIVDDLGKIFDYDLYTITDLKLFPFGNAEL-SDNLTVTCQHGEEECKLN 95
Query: 104 TVEACAIDAWPDL----------RVHFRFIYCVEDLVVNHKQREWESCFGKLNLDPKPVT 153
+EACA+ WPD + + FI CVE + WESC K + K +
Sbjct: 96 ALEACALRTWPDQFDKCDGYGTQKSQYSFIRCVE-----SDTKGWESCV-KNSGREKAIN 149
Query: 154 DCYKGERGHQLSLKYGRQTDALQPPHKYVPWVVVDGQPL---YEDYENFEAYICKAYKGH 210
DCY G+ +L L Y +T L+PPH+YVPWV ++G+PL + ++ A IC AYKG
Sbjct: 150 DCYNGDLSRKLILGYATKTKNLKPPHEYVPWVTLNGKPLDDSVQSTDDLVAQICNAYKGK 209
Query: 211 P--PKVCEGLA----RPPTPTVLEVAEAVNRVSY 238
PKVC A P L+V+ A +Y
Sbjct: 210 TTLPKVCNSSASMSKSPERKWKLQVSYANKATNY 243
>AT4G12870.1 | chr4:7542285-7543421 FORWARD LENGTH=230
Length = 229
Score = 149 bits (376), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 71/169 (42%), Positives = 102/169 (60%), Gaps = 6/169 (3%)
Query: 44 YYETLCPYCSRFIVNHLAGIFEDGIVDAVDLRLVPYGNAHVVGANNTISCQHGSEECFLN 103
YYE+LCP C FIV+ L +F+ + D++LVP+G A V N T+ CQHG EEC LN
Sbjct: 38 YYESLCPGCQSFIVDELVKVFDSDLDTITDVKLVPFGYAKV-SNNLTVICQHGEEECKLN 96
Query: 104 TVEACAIDAWPDLRVHFRFIYCVEDLVVNHKQREWESCFGKLNLDPKPVTDCYKGERGHQ 163
+EAC I+ P+ + ++FI CVE+ N WES K + K + DCY + +
Sbjct: 97 ALEACVINTLPNPKSQYKFIRCVENNTDN-----WESSCLKGYGNEKAINDCYNSDLSKK 151
Query: 164 LSLKYGRQTDALQPPHKYVPWVVVDGQPLYEDYENFEAYICKAYKGHPP 212
L L Y +QT +L+P H++VPWV ++ +PLY ++ +CKAYKG P
Sbjct: 152 LILGYAKQTSSLKPKHEFVPWVTINSKPLYTKLDDLVGQVCKAYKGKTP 200
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.141 0.457
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,043,567
Number of extensions: 267678
Number of successful extensions: 512
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 502
Number of HSP's successfully gapped: 6
Length of query: 265
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 168
Effective length of database: 8,447,217
Effective search space: 1419132456
Effective search space used: 1419132456
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 111 (47.4 bits)