BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0295500 Os03g0295500|J053054B07
         (110 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G06310.1  | chr3:1913260-1914174 REVERSE LENGTH=109            172   5e-44
AT5G18800.1  | chr5:6267304-6268393 FORWARD LENGTH=107            168   5e-43

>AT3G06310.1 | chr3:1913260-1914174 REVERSE LENGTH=109
          Length = 108

 Score =  172 bits (435), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 74/105 (70%), Positives = 89/105 (84%)

Query: 4   SSAPVDASGDPIPTSSVLMAASKHIAVRCRPENVAFLNCKKKDPNPQKCLEKGRQVKRCV 63
           ++A VD +G+PIPTS+VL A++KHI +RC PEN+AFL CKK DPNP+KCLEKGR V RCV
Sbjct: 3   ANAAVDGTGNPIPTSAVLTASAKHIGIRCMPENMAFLKCKKNDPNPEKCLEKGRDVTRCV 62

Query: 64  FDLLKELHQKCPKEMDAYAGCMYYYTNEFDFCRKEQQDFESACPV 108
             LLK+LHQ+CPKEMDAY GCMYYYTNEF+ CRKEQ+ FE  CP+
Sbjct: 63  LGLLKDLHQRCPKEMDAYVGCMYYYTNEFELCRKEQEAFEKVCPL 107



>AT5G18800.1 | chr5:6267304-6268393 FORWARD LENGTH=107
          Length = 106

 Score =  168 bits (426), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 75/104 (72%), Positives = 87/104 (83%)

Query: 5   SAPVDASGDPIPTSSVLMAASKHIAVRCRPENVAFLNCKKKDPNPQKCLEKGRQVKRCVF 64
           S+ VDA+G+PIPTS+VL A++KHI +RC PENVAFL CKK DPNP+KCL+KGR V RCV 
Sbjct: 2   SSAVDATGNPIPTSAVLTASAKHIGMRCMPENVAFLKCKKNDPNPEKCLDKGRDVTRCVL 61

Query: 65  DLLKELHQKCPKEMDAYAGCMYYYTNEFDFCRKEQQDFESACPV 108
            LLK+LHQKC KEMD Y GCMYYYTNEFD CRKEQ+ FE  CP+
Sbjct: 62  GLLKDLHQKCQKEMDDYVGCMYYYTNEFDLCRKEQEAFEKVCPL 105



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.132    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,618,332
Number of extensions: 105035
Number of successful extensions: 211
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 211
Number of HSP's successfully gapped: 2
Length of query: 110
Length of database: 11,106,569
Length adjustment: 79
Effective length of query: 31
Effective length of database: 8,940,705
Effective search space: 277161855
Effective search space used: 277161855
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 104 (44.7 bits)