BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0294600 Os03g0294600|AK110762
(371 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G08943.1 | chr3:2719198-2721911 REVERSE LENGTH=872 461 e-130
AT3G08947.1 | chr3:2724007-2726722 FORWARD LENGTH=874 459 e-130
AT5G53480.1 | chr5:21714016-21716709 FORWARD LENGTH=871 419 e-117
>AT3G08943.1 | chr3:2719198-2721911 REVERSE LENGTH=872
Length = 871
Score = 461 bits (1187), Expect = e-130, Method: Compositional matrix adjust.
Identities = 223/371 (60%), Positives = 291/371 (78%), Gaps = 2/371 (0%)
Query: 1 LGEIISALLATADRSDSNNSRLCASAYETLNEIVRCSHISENLNMIVQLLQEILKRLNQT 60
L EII+ LLA A+R+D S+L +AYETLNE+VRCS++SE ++I LL I+K+L +T
Sbjct: 502 LTEIITHLLAAAERTDGAESKLRGAAYETLNEVVRCSNLSEASSIIAHLLPAIMKKLAET 561
Query: 61 FEIQITSSDDKEKQSDLQALLCGVAQVILQKFSSCHE-KSAILHFADQMMVLFLRVFSCN 119
++ I S+DD+EKQ++LQA LCGV QVI+QK SS + K I+ AD +M LFLRVF C+
Sbjct: 562 MDLPIISTDDREKQAELQASLCGVLQVIIQKLSSRDDMKPIIVQNADDIMRLFLRVFGCH 621
Query: 120 SSNVHEEAMLAIGALAYATGPEFVKYMPEFHKYLEMGLQNFGAYQVCCVSVGVVGDICHA 179
SS+VHEEAMLAIGALAYATG EFVKYMPE KYL+MGLQNF YQVC ++VGV+GDIC A
Sbjct: 622 SSSVHEEAMLAIGALAYATGTEFVKYMPELFKYLQMGLQNFEEYQVCSITVGVIGDICRA 681
Query: 180 LDDKVLPYCDGIMSTLLKDLSSPELHRSVKPPILSCIGDIALTMGEHFEKYVPYTMPMLQ 239
LD+K+LP+CD IM L+++L S LHRSVKPPI SC GDIAL +G HFE+YV + ++Q
Sbjct: 682 LDEKILPFCDQIMGLLIQNLQSGALHRSVKPPIFSCFGDIALAIGAHFERYVAPAVQIMQ 741
Query: 240 GAAELCFRMDAPDDDSIEYQNELSRSIFEAYSGILQGFKNSKSELMVPYAGNIFQFVELV 299
GAA++C +MD D++ ++Y N+L RSIFEAYSGILQGFK++K+ELM+PYA ++ QFVELV
Sbjct: 742 GAAQVCAQMDTLDEELMDYANQLRRSIFEAYSGILQGFKDAKAELMMPYAQHLLQFVELV 801
Query: 300 LKDNLLRNESVTKAGVAMVGDLADALGPNIKLLFKDSKFHSELLGQCCQSDDEQLRETAS 359
KD+ LR+ESVTKA VA +GDLAD +G N K LF++ F E L +C +S+DE L+ TA
Sbjct: 802 SKDS-LRDESVTKAAVAAMGDLADVVGENTKQLFQNFTFCDEFLNECLESEDEDLKVTAR 860
Query: 360 WVQGVITRVLV 370
W QG+I R+++
Sbjct: 861 WTQGMIARLVL 871
>AT3G08947.1 | chr3:2724007-2726722 FORWARD LENGTH=874
Length = 873
Score = 459 bits (1181), Expect = e-130, Method: Compositional matrix adjust.
Identities = 221/370 (59%), Positives = 288/370 (77%), Gaps = 2/370 (0%)
Query: 1 LGEIISALLATADRSDSNNSRLCASAYETLNEIVRCSHISENLNMIVQLLQEILKRLNQT 60
L EII+ LLA A+R+D S+L +AYETLNE+VRCS++SE ++I LL I+K+L +T
Sbjct: 502 LTEIITHLLAAAERTDGAESKLRGAAYETLNEVVRCSNLSEASSIIAHLLPAIMKKLAET 561
Query: 61 FEIQITSSDDKEKQSDLQALLCGVAQVILQKFSSCHE-KSAILHFADQMMVLFLRVFSCN 119
++ I S+DD+EKQ+++QA LCGV QVI+QK S + K I+ AD +M LFLRVF C+
Sbjct: 562 MDLPIISTDDREKQAEVQASLCGVLQVIIQKLSGREDTKPIIMQSADDIMRLFLRVFGCH 621
Query: 120 SSNVHEEAMLAIGALAYATGPEFVKYMPEFHKYLEMGLQNFGAYQVCCVSVGVVGDICHA 179
SS+VHEEAMLAIGALAYATG EFVKYMPE KYL+MGLQNF YQVC ++VGV+GDIC A
Sbjct: 622 SSSVHEEAMLAIGALAYATGAEFVKYMPELFKYLQMGLQNFEEYQVCSITVGVLGDICRA 681
Query: 180 LDDKVLPYCDGIMSTLLKDLSSPELHRSVKPPILSCIGDIALTMGEHFEKYVPYTMPMLQ 239
LD+K+LP+CD IM L+++L S LHRSVKPPI SC GDIAL +G HFE+YV + ++Q
Sbjct: 682 LDEKILPFCDQIMGLLIQNLQSGALHRSVKPPIFSCFGDIALAIGAHFERYVAPAVQIMQ 741
Query: 240 GAAELCFRMDAPDDDSIEYQNELSRSIFEAYSGILQGFKNSKSELMVPYAGNIFQFVELV 299
GAA++C +MD D++ ++Y N+L RSIFEAYSGILQGFK++K+ELM+PYA ++ QFVELV
Sbjct: 742 GAAQVCAQMDTLDEELMDYANQLRRSIFEAYSGILQGFKDTKAELMMPYAQHLLQFVELV 801
Query: 300 LKDNLLRNESVTKAGVAMVGDLADALGPNIKLLFKDSKFHSELLGQCCQSDDEQLRETAS 359
KD LR+ESVTKA VA +GDLAD +G N K LF++ F E L +C +S+DE L+ TA
Sbjct: 802 SKDP-LRDESVTKAAVAAMGDLADVVGENTKQLFQNFTFFGEFLNECLESEDEDLKVTAR 860
Query: 360 WVQGVITRVL 369
W QG+I R++
Sbjct: 861 WTQGMIARLM 870
>AT5G53480.1 | chr5:21714016-21716709 FORWARD LENGTH=871
Length = 870
Score = 419 bits (1076), Expect = e-117, Method: Compositional matrix adjust.
Identities = 206/368 (55%), Positives = 259/368 (70%), Gaps = 3/368 (0%)
Query: 3 EIISALLATADRSDSNNSRLCASAYETLNEIVRCSHISENLNMIVQLLQEILKRLNQTFE 62
EII +LLA A R D+ SRL +AYE LNE+VRCS E M++QL+ I+ L+ T E
Sbjct: 503 EIIKSLLAVAHREDATESRLRTAAYEALNEVVRCS-TDETSTMVLQLVPVIMMELHNTLE 561
Query: 63 IQITSSDDKEKQSDLQALLCGVAQVILQKFSSCHEKSAILHFADQMMVLFLRVFSCNSSN 122
+ S D++EKQ++LQ LLCG QVI+QK S KS + +ADQMM LFLRVF C S+
Sbjct: 562 GEKLSLDEREKQNELQGLLCGCLQVIIQKLGSEPTKSKFMEYADQMMGLFLRVFGCRSAT 621
Query: 123 VHEEAMLAIGALAYATGPEFVKYMPEFHKYLEMGLQNFGAYQVCCVSVGVVGDICHALDD 182
HEEAMLAIGALAYA GP F KYMPEF+KYLEMGLQNF YQVC V+VGVVGD+C AL+D
Sbjct: 622 AHEEAMLAIGALAYAAGPNFAKYMPEFYKYLEMGLQNFEEYQVCAVTVGVVGDVCRALED 681
Query: 183 KVLPYCDGIMSTLLKDLSSPELHRSVKPPILSCIGDIALTMGEHFEKYVPYTMPMLQGAA 242
K+LPYCDGIM+ LLKDLSS +LHRSVKPPI SC GDIAL +GE F+KY Y+MPMLQ AA
Sbjct: 682 KILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGEDFDKYWRYSMPMLQSAA 741
Query: 243 ELCFRMDAPDDDSIEYQNELSRSIFEAYSGILQGFKNS-KSELMVPYAGNIFQFVELVLK 301
EL DD+ EY N L I EAYSGI QGFKNS K++L++P+A +I QF++ +
Sbjct: 742 ELSAHSAGADDEMTEYTNSLRNGILEAYSGIFQGFKNSAKTQLLIPFAPHILQFLDSIYM 801
Query: 302 DNLLRNESVTKAGVAMVGDLADALGPNIKLLFKDSKFHSELLGQCCQSDDEQLRETASWV 361
+ + +E V K + ++GDLAD LG ++ L + S E L +C S+D ++E A W
Sbjct: 802 EKDM-DEVVMKTAIGVLGDLADTLGSHVGGLIQQSVSSKEFLNECLSSEDHTIKEAAEWA 860
Query: 362 QGVITRVL 369
+ ITR +
Sbjct: 861 KHAITRAI 868
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.135 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,573,269
Number of extensions: 302222
Number of successful extensions: 818
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 810
Number of HSP's successfully gapped: 3
Length of query: 371
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 271
Effective length of database: 8,364,969
Effective search space: 2266906599
Effective search space used: 2266906599
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 112 (47.8 bits)