BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0294200 Os03g0294200|AK069285
(653 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G07110.1 | chr1:2178363-2183980 REVERSE LENGTH=745 781 0.0
AT3G50520.1 | chr3:18748058-18749418 FORWARD LENGTH=231 60 3e-09
AT5G04120.1 | chr5:1120091-1121605 FORWARD LENGTH=239 52 7e-07
>AT1G07110.1 | chr1:2178363-2183980 REVERSE LENGTH=745
Length = 744
Score = 781 bits (2017), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/468 (78%), Positives = 415/468 (88%), Gaps = 6/468 (1%)
Query: 180 QEEQRAIFVDRGVGSPEFARPTNETISMSNIKFDSE--AKDMPXXXXXXXXXXXXDQMYG 237
++ Q+ +FVDRGVGSP + ++S S+ D++ MP DQM G
Sbjct: 281 KDGQKGLFVDRGVGSPRLVK----SLSASSFLIDTKQIKNSMPAAAGAVAAAAVADQMLG 336
Query: 238 PKEDRKLAIVLVGLPARGKTFTAAKLTRYLRWLGHETKHFNVGKYRRLKHGINQTADFFR 297
PKEDR LAIVLVGLPARGKTFTAAKLTRYLRWLGH+TKHFNVGKYRRLKHG+N +ADFFR
Sbjct: 337 PKEDRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNMSADFFR 396
Query: 298 GDNKEGVEARNEVAALAMEDMLSWMQEGGQVGIFDATNSTRNRRNMLMKMAEGKCKIIFL 357
DN EGVEAR EVAALAMEDM++WMQEGGQVGIFDATNSTR RRNMLMKMAEGKCKIIFL
Sbjct: 397 ADNPEGVEARTEVAALAMEDMIAWMQEGGQVGIFDATNSTRVRRNMLMKMAEGKCKIIFL 456
Query: 358 ETICNDQNVLERNMRLKVQRSPDYAEQTDFEAGVRDFKERLAYYEKVYEPVEEGSYVKMI 417
ET+CND+ ++ERN+RLK+Q+SPDY+E+ DFEAGVRDF++RLA YEKVYEPVEEGSY+KMI
Sbjct: 457 ETLCNDERIIERNIRLKIQQSPDYSEEMDFEAGVRDFRDRLANYEKVYEPVEEGSYIKMI 516
Query: 418 DMVSGTGGQLQINDISGYLPGRIVFFLVNCHLTPRPILLTRHGESLDNVRGRIGGDSSLS 477
DMVSG GGQ+Q+N+ISGYLPGRIVFFLVN HLTPRPILLTRHGES+DNVRGRIGGDS +S
Sbjct: 517 DMVSGNGGQIQVNNISGYLPGRIVFFLVNTHLTPRPILLTRHGESMDNVRGRIGGDSVIS 576
Query: 478 ETGSLYSRKLASFIEKRLASERTASIWTSTLQRSILTAQPIIGFPKIQWRALDEINAGIC 537
++G LY++KLASF+EKRL SE+ ASIWTSTLQR+ LTA I+GFPK+QWRALDEINAG+C
Sbjct: 577 DSGKLYAKKLASFVEKRLKSEKAASIWTSTLQRTNLTASSIVGFPKVQWRALDEINAGVC 636
Query: 538 DGMTYDEIKKIKPEEYESRSKDKLRYRYPRGESYLDVIQRLEPVIIELERQRAPVVVISH 597
DGMTY+E+KK PEEYESR KDKLRYRYPRGESYLDVIQRLEPVIIELERQRAPVVVISH
Sbjct: 637 DGMTYEEVKKNMPEEYESRKKDKLRYRYPRGESYLDVIQRLEPVIIELERQRAPVVVISH 696
Query: 598 QAVLRALYAYFADKPLEELPNIEIPLHTIIEIQMGVAGVQEKRYKLMD 645
QAVLRALYAYFAD+PL+E+P IE+PLHTIIEIQMGV+GVQEKRYKLMD
Sbjct: 697 QAVLRALYAYFADRPLKEIPQIEMPLHTIIEIQMGVSGVQEKRYKLMD 744
Score = 152 bits (383), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 78/155 (50%), Positives = 110/155 (70%), Gaps = 3/155 (1%)
Query: 14 QLFVSIKLECPRLAEMGLVPHVFGSHPVAGAWDPSKALLMEQEEAALWGLSCIVPSHRET 73
QL+VS+K+E ++ E L PHV+GS P+ G+WDPSKAL M++E A + LS +VP ET
Sbjct: 22 QLYVSLKMENSKV-EGELTPHVYGSLPLIGSWDPSKALPMQRESALMSELSFVVPPDHET 80
Query: 74 LDFKFLLKPKDNSSHCIVEEGPDRSLVCGSNEVEIRNALFKFNDETGVVECKIFVETEIL 133
LDFKFLLKPK+ ++ CIVEEG +R L GS + + R ALF+ + +VE ++F+ + +
Sbjct: 81 LDFKFLLKPKNRNTPCIVEEGENRLLTGGSLQGDARLALFRLEGDV-IVEFRVFINADRV 139
Query: 134 SPFDLAASWKAHQEHLQPR-VRGAHDVIMNADSES 167
SP DLA SW+A++E+LQP VRG DV +N D +S
Sbjct: 140 SPIDLATSWRAYRENLQPSTVRGIPDVSINPDPKS 174
>AT3G50520.1 | chr3:18748058-18749418 FORWARD LENGTH=231
Length = 230
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 95/189 (50%), Gaps = 20/189 (10%)
Query: 454 ILLTRHGESLDNVRGRIGG--DSSLSETGSLYSRKLASFIEKRLASERTAS-IWTSTLQR 510
I++ RHGE+ N +I G D L++ G R+ A + +RL+ E+ S +++S L+R
Sbjct: 16 IVVVRHGETSWNAERKIQGHLDVELNDAG----RQQAQRVAERLSKEQKISHVYSSDLKR 71
Query: 511 SILTAQPIIG----FPKIQWRALDEINAGICDGMTYDEIKKIKPEEYESRSKDKLRYRYP 566
+ TAQ I + R L E + G G+ Y E KI+PE Y++ S ++ P
Sbjct: 72 AFETAQIIAAKCGKLEVLTDRDLRERHLGDMQGLVYQEASKIRPEAYKAFSSNRTDVDIP 131
Query: 567 RGESYLDVIQRLEPVIIELER-----QRAPVVVISHQAVLRALY--AYFADKPLEELPNI 619
G LD + + L+R + +VV++H V+R+LY A + + +E++ N
Sbjct: 132 GGGESLDKL--YDRCTTALQRIGDKHKGERIVVVTHGGVIRSLYERARPSARKVEKILNT 189
Query: 620 EIPLHTIIE 628
+ + + +
Sbjct: 190 SVNVFRLFD 198
>AT5G04120.1 | chr5:1120091-1121605 FORWARD LENGTH=239
Length = 238
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 81/162 (50%), Gaps = 14/162 (8%)
Query: 454 ILLTRHGESLDNVRGRIGG--DSSLSETGSLYSRKLASFIEKRLAS-ERTASIWTSTLQR 510
I+L RHGE+ N GRI G +S L+E G K A I +RL ER ++++S L+R
Sbjct: 27 IVLVRHGETTWNAAGRIQGQIESDLNEVG----LKQAVAIAERLGKEERPVAVYSSDLKR 82
Query: 511 ----SILTAQPIIGFPKIQWRALDEINAGICDGMTYDEIKKIKPEEYESRSKDKLRYRYP 566
+++ A+ I+ L E + G G+ + E + +PE Y + + P
Sbjct: 83 AKDTALMIAKTCFCPEVIEVPDLKERHVGSLQGLYWKEGAEKEPEAYSAFFSSQNDLEIP 142
Query: 567 -RGESYLDVIQRLEPVIIELERQRAP--VVVISHQAVLRALY 605
GES+ + R + ++ ++ V+V++H VLRA+Y
Sbjct: 143 GGGESFDQLADRSMDALEQIAKKHKGERVIVVTHGGVLRAIY 184
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.136 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 14,116,871
Number of extensions: 610889
Number of successful extensions: 1370
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1370
Number of HSP's successfully gapped: 4
Length of query: 653
Length of database: 11,106,569
Length adjustment: 105
Effective length of query: 548
Effective length of database: 8,227,889
Effective search space: 4508883172
Effective search space used: 4508883172
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 115 (48.9 bits)