BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0293100 Os03g0293100|AK060680
         (244 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G56010.1  | chr3:20788758-20789656 FORWARD LENGTH=202          137   4e-33

>AT3G56010.1 | chr3:20788758-20789656 FORWARD LENGTH=202
          Length = 201

 Score =  137 bits (346), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 71/133 (53%), Positives = 89/133 (66%), Gaps = 19/133 (14%)

Query: 111 KRAPLTARERLRAARVLGKYAEXXXXXXXXXXXXXXXXXXXXXXXXEFGSRVLDALRETD 170
           K+APLTARERLRAARVL +Y E                        + GS++LD L+E+D
Sbjct: 88  KKAPLTARERLRAARVLSRYTEATPKPSKP----------------KMGSQLLDVLKESD 131

Query: 171 GKAGKKRSSRLPEAPSNMFDDSKRGLPKEGWTFEALPFGTDVIVIAASFTLITVVMFGTT 230
            K+  KR   LPEAP+NM DDS+RG+PK G TF+ LP G+D+++IA SF  I+ VMF TT
Sbjct: 132 KKS--KRKPGLPEAPTNMLDDSRRGMPKSGLTFD-LPGGSDILIIAFSFVFISTVMFATT 188

Query: 231 YLVWKLGAIHFNE 243
           +LVWKLGAIHFNE
Sbjct: 189 FLVWKLGAIHFNE 201



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.131    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,365,663
Number of extensions: 98841
Number of successful extensions: 227
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 224
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 148
Effective length of database: 8,474,633
Effective search space: 1254245684
Effective search space used: 1254245684
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 110 (47.0 bits)