BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0291500 Os03g0291500|015-004-C07
         (89 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G65010.2  | chr5:25969224-25972278 FORWARD LENGTH=580          111   7e-26
AT3G47340.1  | chr3:17438136-17441043 REVERSE LENGTH=585          110   2e-25
AT5G10240.1  | chr5:3212934-3216418 REVERSE LENGTH=579            110   2e-25

>AT5G65010.2 | chr5:25969224-25972278 FORWARD LENGTH=580
          Length = 579

 Score =  111 bits (278), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 53/75 (70%), Positives = 58/75 (77%)

Query: 1   DGIDAIEEVIYHDETYDVTTIRASTPMFLMARKIKALGVKMVXXXXXXXXXXXXXXXFHF 60
           DGIDAIEEVIYH ETYDVTTIRASTPMFLM+RKIK+LGVKMV               FH 
Sbjct: 298 DGIDAIEEVIYHIETYDVTTIRASTPMFLMSRKIKSLGVKMVLSGEGSDEILGGYLYFHK 357

Query: 61  APNKEEFHKETCRKV 75
           APNK+EFH+ETCRK+
Sbjct: 358 APNKKEFHEETCRKI 372



>AT3G47340.1 | chr3:17438136-17441043 REVERSE LENGTH=585
          Length = 584

 Score =  110 bits (274), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 52/75 (69%), Positives = 58/75 (77%)

Query: 1   DGIDAIEEVIYHDETYDVTTIRASTPMFLMARKIKALGVKMVXXXXXXXXXXXXXXXFHF 60
           DGIDAIE+VIYH ETYDVTTIRASTPMFLM+RKIK+LGVKMV               FH 
Sbjct: 298 DGIDAIEDVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVLSGEGADEIFGGYLYFHK 357

Query: 61  APNKEEFHKETCRKV 75
           APNK+EFH+ETCRK+
Sbjct: 358 APNKKEFHQETCRKI 372



>AT5G10240.1 | chr5:3212934-3216418 REVERSE LENGTH=579
          Length = 578

 Score =  110 bits (274), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 53/75 (70%), Positives = 58/75 (77%)

Query: 1   DGIDAIEEVIYHDETYDVTTIRASTPMFLMARKIKALGVKMVXXXXXXXXXXXXXXXFHF 60
           DGIDAIEEVIYH ETYDVTTIRASTPMFLM+RKIK+LGVKMV               FH 
Sbjct: 298 DGIDAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVLSGEGSDEIFGGYLYFHK 357

Query: 61  APNKEEFHKETCRKV 75
           APNK+EFH+ETCRK+
Sbjct: 358 APNKKEFHEETCRKI 372



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.322    0.131    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,367,471
Number of extensions: 28439
Number of successful extensions: 65
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 65
Number of HSP's successfully gapped: 3
Length of query: 89
Length of database: 11,106,569
Length adjustment: 60
Effective length of query: 29
Effective length of database: 9,461,609
Effective search space: 274386661
Effective search space used: 274386661
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 104 (44.7 bits)