BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0287700 Os03g0287700|AK058301
         (131 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G53540.1  | chr3:19846805-19850670 REVERSE LENGTH=925           55   9e-09
AT2G39435.1  | chr2:16464806-16466492 REVERSE LENGTH=465           49   1e-06

>AT3G53540.1 | chr3:19846805-19850670 REVERSE LENGTH=925
          Length = 924

 Score = 55.5 bits (132), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 62/129 (48%), Gaps = 12/129 (9%)

Query: 7   CPVGPQVFDRLERKYNKISAWPRPERRLLFDLANTVLSEILA------PWKSSRRCCXXX 60
            PV P +F+ LE+KY+ +    R ER+LLFD  +  +  +L       PW  S + C   
Sbjct: 801 TPVEPSLFEDLEKKYSSVKTSTRLERKLLFDQISREVLHMLKQLSDPHPWVKSTKVCPKW 860

Query: 61  XXXXXXXXXXQTMVRRQEELAVGHPDDKVLDPEWLEVGEDINTVGKQIAKMLHGDLLDEI 120
                       + R+ E+ +    ++K L  +WL + +DI  +G++I  M    L DE+
Sbjct: 861 DANKIQETLRDLVTRKDEKPSKYDVEEKEL--QWLSLEDDIEIIGREIEVM----LTDEL 914

Query: 121 ILEFLSGCV 129
           I E + G +
Sbjct: 915 ITELVVGAI 923



>AT2G39435.1 | chr2:16464806-16466492 REVERSE LENGTH=465
          Length = 464

 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/124 (30%), Positives = 63/124 (50%), Gaps = 12/124 (9%)

Query: 9   VGPQVFDRLERKYNKISAWPRPERRLLFDLANTVLSEILAP------WKS--SRRCCXXX 60
           + P++F++LE+KY   ++W R +R++LFD  N+ L EIL        WK   SRR     
Sbjct: 339 ITPKIFEKLEKKYYTETSWKRSDRKILFDRVNSSLVEILESFSATPTWKKPVSRRLGTAL 398

Query: 61  XXXXXXXXXXQTMVRRQEELAVGHPDDK--VLD-PEWLEVGEDINTVGKQIAKMLHGDLL 117
                     + +  RQE+ +      K  V+D  EWLE+  D  +V  ++  M+  +LL
Sbjct: 399 STCGLKQELWKVL-SRQEKRSKKKSLAKVPVIDIDEWLELEADDESVVCELESMIVDELL 457

Query: 118 DEII 121
            E++
Sbjct: 458 SEVV 461



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.138    0.444 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,666,304
Number of extensions: 85672
Number of successful extensions: 214
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 212
Number of HSP's successfully gapped: 2
Length of query: 131
Length of database: 11,106,569
Length adjustment: 87
Effective length of query: 44
Effective length of database: 8,721,377
Effective search space: 383740588
Effective search space used: 383740588
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 106 (45.4 bits)