BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0283800 Os03g0283800|AK072879
(157 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G55020.1 | chr3:20389278-20394713 REVERSE LENGTH=778 246 4e-66
AT2G37290.2 | chr2:15656935-15661335 REVERSE LENGTH=917 229 4e-61
AT2G39280.2 | chr2:16402001-16406650 REVERSE LENGTH=773 227 2e-60
AT3G07890.1 | chr3:2516639-2518784 REVERSE LENGTH=401 102 9e-23
AT5G15930.1 | chr5:5200329-5202250 FORWARD LENGTH=357 81 2e-16
AT3G02460.1 | chr3:506110-508092 FORWARD LENGTH=354 77 5e-15
AT5G24390.1 | chr5:8327004-8329238 REVERSE LENGTH=529 50 3e-07
AT5G53570.2 | chr5:21760924-21763280 REVERSE LENGTH=578 50 4e-07
AT3G49350.1 | chr3:18297663-18299846 REVERSE LENGTH=540 48 3e-06
>AT3G55020.1 | chr3:20389278-20394713 REVERSE LENGTH=778
Length = 777
Score = 246 bits (627), Expect = 4e-66, Method: Composition-based stats.
Identities = 112/128 (87%), Positives = 123/128 (96%)
Query: 1 DLPRTFPGHPALDEDGRNALRRLLTAYARHNPSVGYCQAMNFFAGLFLLFMPEEHAFWAL 60
DLPRTFPGHPALD+DGRNALRRLLTAYARHNPSVGYCQAMNFFA L LL MPEE+AFWAL
Sbjct: 313 DLPRTFPGHPALDDDGRNALRRLLTAYARHNPSVGYCQAMNFFAALLLLLMPEENAFWAL 372
Query: 61 VGVIDEYFDGYYTEEMIESQVDQLVLEEVVRERFPKLAKHMDFLGVQVAWVTGPWFLSIF 120
+G+ID+YF+GYY+EEMIESQVDQLVLEE+VRERFPKL H+D+LGVQVAWVTGPWFLSIF
Sbjct: 373 IGLIDDYFNGYYSEEMIESQVDQLVLEELVRERFPKLVHHLDYLGVQVAWVTGPWFLSIF 432
Query: 121 INMLPWES 128
+NMLPWES
Sbjct: 433 MNMLPWES 440
>AT2G37290.2 | chr2:15656935-15661335 REVERSE LENGTH=917
Length = 916
Score = 229 bits (585), Expect = 4e-61, Method: Composition-based stats.
Identities = 101/161 (62%), Positives = 119/161 (73%), Gaps = 34/161 (21%)
Query: 1 DLPRTFPGHPALDEDGRNALRRLLTAYARHNPSVGYCQAMNFFAGLFLLFMPEEHAFWAL 60
D+PRTFPGHPAL+E+GR++LRR+L AYA HNPSVGYCQAMNFFAGL LL MPEE+AFW L
Sbjct: 370 DIPRTFPGHPALNENGRDSLRRILLAYACHNPSVGYCQAMNFFAGLLLLLMPEENAFWTL 429
Query: 61 VGVIDEYFDGYYTEEMIESQVDQLVLEEVVRERFPKLA---------------------- 98
VG+ID+YFDGYYTEEMIESQVDQLV EE++RERFPKL
Sbjct: 430 VGIIDDYFDGYYTEEMIESQVDQLVFEELMRERFPKLGSLFSSDIQVSLHIFLPYTEQCD 489
Query: 99 ------------KHMDFLGVQVAWVTGPWFLSIFINMLPWE 127
H+D+LGVQVAW++GPWFLSIF+N++PWE
Sbjct: 490 RFFYSNNPPDAVNHLDYLGVQVAWISGPWFLSIFVNIIPWE 530
>AT2G39280.2 | chr2:16402001-16406650 REVERSE LENGTH=773
Length = 772
Score = 227 bits (578), Expect = 2e-60, Method: Composition-based stats.
Identities = 105/128 (82%), Positives = 117/128 (91%)
Query: 1 DLPRTFPGHPALDEDGRNALRRLLTAYARHNPSVGYCQAMNFFAGLFLLFMPEEHAFWAL 60
DLPRTFPGHPALD+D RNALRRLLTAYARHNPSVGYCQAMNFFA L LL MPEE+AFW+L
Sbjct: 328 DLPRTFPGHPALDDDFRNALRRLLTAYARHNPSVGYCQAMNFFAALLLLLMPEENAFWSL 387
Query: 61 VGVIDEYFDGYYTEEMIESQVDQLVLEEVVRERFPKLAKHMDFLGVQVAWVTGPWFLSIF 120
G+ID+YF YY+EEM+ESQVDQ VLEE++RERFPKL H+D+LGVQVA VTGPWFL+IF
Sbjct: 388 TGIIDDYFHDYYSEEMLESQVDQRVLEELLRERFPKLVHHLDYLGVQVACVTGPWFLTIF 447
Query: 121 INMLPWES 128
INMLPWES
Sbjct: 448 INMLPWES 455
>AT3G07890.1 | chr3:2516639-2518784 REVERSE LENGTH=401
Length = 400
Score = 102 bits (254), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 53/131 (40%), Positives = 78/131 (59%), Gaps = 3/131 (2%)
Query: 1 DLPRTFPGHPALDE-DGRNALRRLLTAYARHNPSVGYCQAMNFFAGLFLLFMP-EEHAFW 58
DLPRTFPGHP LD +G ALRR+L Y+ + VGYCQ +N+ A L LL M EE AFW
Sbjct: 165 DLPRTFPGHPWLDTPEGHAALRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFW 224
Query: 59 ALVGVIDEYF-DGYYTEEMIESQVDQLVLEEVVRERFPKLAKHMDFLGVQVAWVTGPWFL 117
L +++ YT + V+Q V ++++ ++ ++A H++ +G V+ V WFL
Sbjct: 225 MLAVLLENVLVRDCYTTNLSGCHVEQRVFKDLLAQKCSRIATHLEDMGFDVSLVATEWFL 284
Query: 118 SIFINMLPWES 128
+F LP E+
Sbjct: 285 CLFSKSLPSET 295
>AT5G15930.1 | chr5:5200329-5202250 FORWARD LENGTH=357
Length = 356
Score = 80.9 bits (198), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 70/136 (51%), Gaps = 7/136 (5%)
Query: 1 DLPRTFPGHPALDED---GRNALRRLLTAYARHNPSVGYCQAMNFFAGLFLLFMPEEHAF 57
D+ RTFP H + G+ +L +L AY+ ++ VGY Q M F AGL LL+M EE AF
Sbjct: 130 DISRTFPSHVFFQKRHGPGQRSLYNVLKAYSVYDRDVGYVQGMGFIAGLLLLYMSEEDAF 189
Query: 58 WALV----GVIDEYFDGYYTEEMIESQVDQLVLEEVVRERFPKLAKHMDFLGVQVAWVTG 113
W LV G + +G Y + Q L +++VRE PKL +H + +
Sbjct: 190 WLLVALLKGAVHSPIEGLYQAGLPLVQQYLLQFDQLVRELMPKLGEHFTQEMINPSMYAS 249
Query: 114 PWFLSIFINMLPWESG 129
WF+++F LP+ S
Sbjct: 250 QWFITVFSYSLPFHSA 265
>AT3G02460.1 | chr3:506110-508092 FORWARD LENGTH=354
Length = 353
Score = 76.6 bits (187), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 67/133 (50%), Gaps = 7/133 (5%)
Query: 1 DLPRTFPGHPALDED---GRNALRRLLTAYARHNPSVGYCQAMNFFAGLFLLFMPEEHAF 57
D+ RTFP H + G+ +L +L AY+ ++ VGY Q M F AGL LL+M EE AF
Sbjct: 133 DISRTFPSHVFFQKRHGPGQRSLYNVLKAYSVYDRDVGYVQGMGFIAGLLLLYMSEEDAF 192
Query: 58 WALV----GVIDEYFDGYYTEEMIESQVDQLVLEEVVRERFPKLAKHMDFLGVQVAWVTG 113
W LV G + +G Y + Q LE +V+E PKL +H + +
Sbjct: 193 WLLVALLKGAVHAPMEGLYHAGLPLVQQYLFQLESLVKELIPKLGEHFTQEMINPSMYAS 252
Query: 114 PWFLSIFINMLPW 126
WF+++F P+
Sbjct: 253 QWFITVFSYSFPF 265
>AT5G24390.1 | chr5:8327004-8329238 REVERSE LENGTH=529
Length = 528
Score = 50.4 bits (119), Expect = 3e-07, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 49/82 (59%), Gaps = 4/82 (4%)
Query: 23 LLTAYARHNPSVGYCQAMNFFAGLFLLFMPEEH-AFWALVGVIDEYFDGYYTEEM-IESQ 80
+L AYA H+P +GYCQ M+ L +P+++ AFW VG + + + +E+ I Q
Sbjct: 322 VLEAYALHDPEIGYCQGMSDLLSPILSVIPDDYEAFWCFVGFMKKARQNFRVDEVGITRQ 381
Query: 81 VDQLVLEEVVRERFPKLAKHMD 102
++ ++ ++++ + +L KH++
Sbjct: 382 LN--IVSKIIKSKDSQLYKHLE 401
>AT5G53570.2 | chr5:21760924-21763280 REVERSE LENGTH=578
Length = 577
Score = 50.4 bits (119), Expect = 4e-07, Method: Composition-based stats.
Identities = 32/113 (28%), Positives = 58/113 (51%), Gaps = 6/113 (5%)
Query: 23 LLTAYARHNPSVGYCQAMNFFAGLFLLFMPEEH-AFWALVGVIDEYFDGYYTEEM-IESQ 80
+L AYA ++P +GYCQ M+ L + E+H AFW VG + + + +E I+ Q
Sbjct: 370 ILEAYAMYDPEIGYCQGMSDLLSPILAVISEDHEAFWCFVGFMKKARHNFRLDEAGIQRQ 429
Query: 81 VDQLVLEEVVRERFPKLAKHMDFLGVQVAWVTGPWFLSIFINMLPWESGQVLC 133
+ ++ ++++ + +L KH++ L + L +F L +E Q LC
Sbjct: 430 LS--IVSKIIKNKDSQLYKHLENLQAEDCSFVYRMVLVMFRRELSFE--QTLC 478
>AT3G49350.1 | chr3:18297663-18299846 REVERSE LENGTH=540
Length = 539
Score = 47.8 bits (112), Expect = 3e-06, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Query: 23 LLTAYARHNPSVGYCQAMNFFAGLFLLFMPEEH-AFWALVGVIDEYFDGYYTEEM-IESQ 80
+L AYA ++P +GYCQ M+ L +P++H FW VG + + + +E+ I Q
Sbjct: 335 VLEAYALYDPDIGYCQGMSDLLSPILSVIPDDHEVFWCFVGFMKKARHNFRLDEVGIRRQ 394
Query: 81 VDQLVLEEVVRERFPKLAKHMDFL 104
++ ++ ++++ + +L +H++ L
Sbjct: 395 LN--IVSKIIKSKDSQLYRHLEKL 416
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.328 0.144 0.462
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,672,059
Number of extensions: 144647
Number of successful extensions: 379
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 379
Number of HSP's successfully gapped: 10
Length of query: 157
Length of database: 11,106,569
Length adjustment: 90
Effective length of query: 67
Effective length of database: 8,639,129
Effective search space: 578821643
Effective search space used: 578821643
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 107 (45.8 bits)