BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0277500 Os03g0277500|AK063650
         (139 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G07645.1  | chr1:2367612-2368349 REVERSE LENGTH=138            184   9e-48

>AT1G07645.1 | chr1:2367612-2368349 REVERSE LENGTH=138
          Length = 137

 Score =  184 bits (468), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 88/132 (66%), Positives = 98/132 (74%)

Query: 7   VSPAFAYTVVYVKDVAKSAAFYSAAFGYTVRRLDQSHKWAELESGTTTIAFTPLHQRETD 66
           + PAFAYTVVYVKDVAKS  FYS AFG+ VRRLD+SH+W ELESG TTIAFTPLHQ ETD
Sbjct: 6   MRPAFAYTVVYVKDVAKSVEFYSRAFGHNVRRLDESHRWGELESGQTTIAFTPLHQHETD 65

Query: 67  ALTGAVQLPDSAGERGPVEICFXXXXXXXXXXXXXXSGAVPVSPPEQKSWGQKVGYVRDI 126
            LTG VQ   SA ER P+E+CF              +GA  VS PE K WGQKVGYVRDI
Sbjct: 66  DLTGKVQATQSARERAPIEVCFCYPDVDAAFKRAVENGAEAVSKPEDKEWGQKVGYVRDI 125

Query: 127 DGIIVRMGSHVR 138
           DGI+VR+GSHV+
Sbjct: 126 DGIVVRIGSHVK 137



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.131    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,625,644
Number of extensions: 82888
Number of successful extensions: 133
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 133
Number of HSP's successfully gapped: 1
Length of query: 139
Length of database: 11,106,569
Length adjustment: 88
Effective length of query: 51
Effective length of database: 8,693,961
Effective search space: 443392011
Effective search space used: 443392011
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 106 (45.4 bits)