BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0274300 Os03g0274300|J065194E20
(221 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G07540.1 | chr1:2318433-2321048 REVERSE LENGTH=631 165 2e-41
AT5G13820.1 | chr5:4461694-4464355 FORWARD LENGTH=641 157 4e-39
AT3G12560.1 | chr3:3982272-3984848 REVERSE LENGTH=620 153 8e-38
AT3G46590.2 | chr3:17153642-17155946 FORWARD LENGTH=554 137 6e-33
AT3G53790.1 | chr3:19928478-19930267 FORWARD LENGTH=355 118 2e-27
AT5G59430.1 | chr5:23968254-23970695 FORWARD LENGTH=579 113 8e-26
>AT1G07540.1 | chr1:2318433-2321048 REVERSE LENGTH=631
Length = 630
Score = 165 bits (417), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 91/157 (57%), Positives = 99/157 (63%), Gaps = 26/157 (16%)
Query: 53 SSPDKAST-NSRAIVPVTPADSNAGAIVPANKAKRSPEQGQRRIRRPFSXXXXXXXXXXX 111
S+P++ T SRA++PV+P + A +VP K KRS E QRRIRRPFS
Sbjct: 485 SAPNRGKTIYSRALIPVSPLHAQALTVVPPRKTKRS-EVAQRRIRRPFSVAEVEALVQAV 543
Query: 112 XXXGTGRYAAYFTHLTLHFHNFCFLLYFCFRWRDVKLRAFDNAKHRTYVDLKDKWKTLVH 171
GTGR WRDVKLRAFDNAKHRTYVDLKDKWKTLVH
Sbjct: 544 ERLGTGR------------------------WRDVKLRAFDNAKHRTYVDLKDKWKTLVH 579
Query: 172 TASISPQQRRGEPVPQELLDRVLAAQAYWSQQQAKLQ 208
TA ISPQQRRGEPVPQELLDRVL A AYWSQQQ K Q
Sbjct: 580 TARISPQQRRGEPVPQELLDRVLTAHAYWSQQQGKHQ 616
>AT5G13820.1 | chr5:4461694-4464355 FORWARD LENGTH=641
Length = 640
Score = 157 bits (397), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 82/155 (52%), Positives = 95/155 (61%), Gaps = 24/155 (15%)
Query: 56 DKASTNSRAIVPVTPADSNAGAIVPANKAKRSPEQGQRRIRRPFSXXXXXXXXXXXXXXG 115
++ S++SRA+VPV +S+A A+VP N+ + E QRR RRPFS G
Sbjct: 495 EQPSSDSRALVPVLALESDALALVPVNEKPKRTELSQRRTRRPFSVTEVEALVSAVEEVG 554
Query: 116 TGRYAAYFTHLTLHFHNFCFLLYFCFRWRDVKLRAFDNAKHRTYVDLKDKWKTLVHTASI 175
TGR WRDVKLR+F+NA HRTYVDLKDKWKTLVHTASI
Sbjct: 555 TGR------------------------WRDVKLRSFENASHRTYVDLKDKWKTLVHTASI 590
Query: 176 SPQQRRGEPVPQELLDRVLAAQAYWSQQQAKLQPK 210
SPQQRRGEPVPQELLDRVL A YW+Q Q K K
Sbjct: 591 SPQQRRGEPVPQELLDRVLGAHRYWTQHQMKQNGK 625
>AT3G12560.1 | chr3:3982272-3984848 REVERSE LENGTH=620
Length = 619
Score = 153 bits (386), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 87/176 (49%), Positives = 102/176 (57%), Gaps = 25/176 (14%)
Query: 35 SANYQGSDHDFVHSPGGMSSPDKASTNSRAIVPVTPADSNAGAIVPANKAKRSPEQGQRR 94
S N S+ + V G +S D+ S++S+ +VP+ + A AIVP N+ + E QRR
Sbjct: 449 SRNIVDSNLELVPYQGDISV-DEPSSDSKELVPLPELEVKALAIVPLNQKPKRTELAQRR 507
Query: 95 IRRPFSXXXXXXXXXXXXXXGTGRYAAYFTHLTLHFHNFCFLLYFCFRWRDVKLRAFDNA 154
RRPFS GTGR WRDVKLRAF++A
Sbjct: 508 TRRPFSVTEVEALVQAVEELGTGR------------------------WRDVKLRAFEDA 543
Query: 155 KHRTYVDLKDKWKTLVHTASISPQQRRGEPVPQELLDRVLAAQAYWSQQQAKLQPK 210
HRTYVDLKDKWKTLVHTASISPQQRRGEPVPQELLDRVL A YWSQ Q K Q +
Sbjct: 544 DHRTYVDLKDKWKTLVHTASISPQQRRGEPVPQELLDRVLRAYGYWSQHQGKHQAR 599
>AT3G46590.2 | chr3:17153642-17155946 FORWARD LENGTH=554
Length = 553
Score = 137 bits (344), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 80/158 (50%), Positives = 89/158 (56%), Gaps = 27/158 (17%)
Query: 58 ASTNSRAIVPVTPADSNAGAIVPANKAKRSPEQ--GQRRIRRPFSXXXXXXXXXXXXXXG 115
S +SRA++PV A + P K KR+ +Q QRRIRRPFS G
Sbjct: 414 TSDHSRALIPVASA-AMLAPRPPNRKFKRTEQQLAAQRRIRRPFSVTEVEALVQAVEKLG 472
Query: 116 TGRYAAYFTHLTLHFHNFCFLLYFCFRWRDVKLRAFDNAKHRTYVDLKDKWKTLVHTASI 175
TGR WRDVK+RAF++A HRTYVDLKDKWKTLVHTA I
Sbjct: 473 TGR------------------------WRDVKVRAFEDADHRTYVDLKDKWKTLVHTARI 508
Query: 176 SPQQRRGEPVPQELLDRVLAAQAYWSQQQAKLQPKTPP 213
SPQQRRGEPVPQELLDRVL A AYWSQ PP
Sbjct: 509 SPQQRRGEPVPQELLDRVLKAHAYWSQHLMHQLQTEPP 546
>AT3G53790.1 | chr3:19928478-19930267 FORWARD LENGTH=355
Length = 354
Score = 118 bits (296), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 65/130 (50%), Positives = 74/130 (56%), Gaps = 25/130 (19%)
Query: 75 AGAIVPAN-KAKRSPEQGQRRIRRPFSXXXXXXXXXXXXXXGTGRYAAYFTHLTLHFHNF 133
A ++VP K PE QRRIRRPF+ GTGR
Sbjct: 247 AKSVVPVRMKPAWQPEMVQRRIRRPFTVSEVEALVQAVERLGTGR--------------- 291
Query: 134 CFLLYFCFRWRDVKLRAFDNAKHRTYVDLKDKWKTLVHTASISPQQRRGEPVPQELLDRV 193
WRDVK AF++ HRTYVDLKDKWKTLVHTA IS +QRRGEPVPQ+LLDRV
Sbjct: 292 ---------WRDVKSHAFNHVNHRTYVDLKDKWKTLVHTAKISARQRRGEPVPQDLLDRV 342
Query: 194 LAAQAYWSQQ 203
LAA A+WS +
Sbjct: 343 LAAHAFWSDR 352
>AT5G59430.1 | chr5:23968254-23970695 FORWARD LENGTH=579
Length = 578
Score = 113 bits (282), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 50/60 (83%), Positives = 54/60 (90%)
Query: 142 RWRDVKLRAFDNAKHRTYVDLKDKWKTLVHTASISPQQRRGEPVPQELLDRVLAAQAYWS 201
RWRDVKL AF++A HRTYVDLKDKWKTLVHTA ISPQQRRGEPVPQELL+RVL A YW+
Sbjct: 490 RWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNRVLNAHGYWT 549
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.132 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,671,997
Number of extensions: 180440
Number of successful extensions: 484
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 476
Number of HSP's successfully gapped: 6
Length of query: 221
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 126
Effective length of database: 8,502,049
Effective search space: 1071258174
Effective search space used: 1071258174
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 110 (47.0 bits)