BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0272900 Os03g0272900|AK066807
         (98 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G55515.1  | chr3:20590923-20591162 FORWARD LENGTH=80            52   6e-08
AT2G39705.1  | chr2:16557038-16557301 FORWARD LENGTH=88            51   1e-07
AT2G29125.1  | chr2:12523472-12523819 FORWARD LENGTH=116           47   2e-06
AT2G36985.1  | chr2:15534943-15535104 REVERSE LENGTH=54            45   6e-06
AT1G07490.1  | chr1:2301526-2301849 REVERSE LENGTH=108             45   6e-06

>AT3G55515.1 | chr3:20590923-20591162 FORWARD LENGTH=80
          Length = 79

 Score = 52.0 bits (123), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 21/24 (87%), Positives = 22/24 (91%)

Query: 73 LVKEQRARFYIMRRCVTMLVCWKD 96
          LVKEQRARFYIMRRCV ML+CW D
Sbjct: 47 LVKEQRARFYIMRRCVVMLICWTD 70



>AT2G39705.1 | chr2:16557038-16557301 FORWARD LENGTH=88
          Length = 87

 Score = 50.8 bits (120), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 21/24 (87%), Positives = 23/24 (95%)

Query: 73 LVKEQRARFYIMRRCVTMLVCWKD 96
          LVKEQRARFYIMRRCV ML+CW+D
Sbjct: 59 LVKEQRARFYIMRRCVIMLICWRD 82



>AT2G29125.1 | chr2:12523472-12523819 FORWARD LENGTH=116
          Length = 115

 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 19/23 (82%), Positives = 20/23 (86%)

Query: 72  GLVKEQRARFYIMRRCVTMLVCW 94
            L KEQ+ARFYIMRRCV MLVCW
Sbjct: 87  SLAKEQKARFYIMRRCVAMLVCW 109



>AT2G36985.1 | chr2:15534943-15535104 REVERSE LENGTH=54
          Length = 53

 Score = 45.4 bits (106), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 17/24 (70%), Positives = 22/24 (91%)

Query: 73 LVKEQRARFYIMRRCVTMLVCWKD 96
          +VK+QRA+FYI+RRC+ MLVCW D
Sbjct: 22 VVKKQRAKFYILRRCIAMLVCWHD 45



>AT1G07490.1 | chr1:2301526-2301849 REVERSE LENGTH=108
          Length = 107

 Score = 45.4 bits (106), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 18/23 (78%), Positives = 19/23 (82%)

Query: 72  GLVKEQRARFYIMRRCVTMLVCW 94
            L KEQ+ RFYIMRRCV MLVCW
Sbjct: 80  SLAKEQKGRFYIMRRCVAMLVCW 102



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.324    0.137    0.441 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,743,940
Number of extensions: 46601
Number of successful extensions: 240
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 239
Number of HSP's successfully gapped: 5
Length of query: 98
Length of database: 11,106,569
Length adjustment: 68
Effective length of query: 30
Effective length of database: 9,242,281
Effective search space: 277268430
Effective search space used: 277268430
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 104 (44.7 bits)