BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0270700 Os03g0270700|AK070218
(540 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G76660.1 | chr1:28769157-28771036 REVERSE LENGTH=432 255 3e-68
AT5G52430.1 | chr5:21283093-21285045 REVERSE LENGTH=439 107 2e-23
AT1G63720.1 | chr1:23636122-23637348 REVERSE LENGTH=359 82 6e-16
AT4G25620.1 | chr4:13067447-13069296 REVERSE LENGTH=450 63 3e-10
>AT1G76660.1 | chr1:28769157-28771036 REVERSE LENGTH=432
Length = 431
Score = 255 bits (652), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 189/473 (39%), Positives = 242/473 (51%), Gaps = 60/473 (12%)
Query: 60 QQDRQSRWAGCFSALSCFGSQKGGKRIVPAARIPDG-NASTSRGN-AHQSGSNSNQNVXX 117
+QD++ RW GC SCF SQKGGKRIVPA+RIP+G N S S+ N AHQ+G +NQ
Sbjct: 4 EQDQRKRWGGCLGVFSCFKSQKGGKRIVPASRIPEGGNVSASQPNGAHQAGVLNNQAAGG 63
Query: 118 XXXXXXXXXXXXXXXXXXXX-XTAQSPNRFLSISANSPGGPTSNMFAVGPYANEPQLVSP 176
T QSPN +LS++ANSPGGP+S+M+A GPYA+E QLVSP
Sbjct: 64 INLSLLAPPSSPASFTNSALPSTTQSPNCYLSLAANSPGGPSSSMYATGPYAHETQLVSP 123
Query: 177 PVFSTYTTEPSTAPLTPPPELTHATTPSSPDVPYARFLFSAMDLKTAGKDHNMPYLSTAY 236
PVFST+TTEPSTAP TPPPEL T PSSPDVPYARFL S+MDLK +GK H
Sbjct: 124 PVFSTFTTEPSTAPFTPPPELARLTAPSSPDVPYARFLTSSMDLKNSGKGHY-------- 175
Query: 237 SGGSGLQAXXXXXXXXXXXXXXXXXXXXXRTGLSSPIPEQEVPTAHWKTSRSACDTPYSR 296
+ LQA GL SP + K SRS +
Sbjct: 176 ---NDLQATYSLYPGSPASALRSPISRASGDGLLSP--------QNGKCSRSDSGNTFG- 223
Query: 297 ASPIPEQEVPTAQWKTSRSACDTPYSRNSPSNIFGLDSAASRNYMLDNNFFRPAASAQFY 356
+ T + TP SN F ++ A + LD++ P +
Sbjct: 224 -------------YDT--NGVSTPLQE---SNFFCPETFA--KFYLDHDPSVPQNGGRLS 263
Query: 357 LDQAQQSFP---YNNGGRISVSRD-KQDAEEVEAYRASFGFSADEIVTTQAYVEIPDALD 412
+ + +P Y NG + +R KQD EE+EAYRASFGFSADEI+TT YVEI D +D
Sbjct: 264 VSKDSDVYPTNGYGNGNQNRQNRSPKQDMEELEAYRASFGFSADEIITTSQYVEITDVMD 323
Query: 413 EGFSISPFGNNAPATEVDKPLFNVKVTTSPKKSADQLSNDSPHNVVHLDIFKGTKGGDLS 472
F+ S + + + ++ + N+ TSPK AD S VV F+ K +
Sbjct: 324 GSFNTSAY-SPSDGQKLLRREANLLSQTSPKSEADLDS-----QVVD---FQSPKSSNSY 374
Query: 473 EDEGVVKDCHPFRKAMDEISLKPIEVRKKVQPGQSSSSDAEIEYRRARSLREA 525
+D H A +E L + K + SSSDAE+EYRR RSLRE+
Sbjct: 375 KDHKQRNRIH----ADEEALLSRVGSVKGSRSYHISSSDAEVEYRRGRSLRES 423
>AT5G52430.1 | chr5:21283093-21285045 REVERSE LENGTH=439
Length = 438
Score = 107 bits (266), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 68/165 (41%), Positives = 91/165 (55%), Gaps = 7/165 (4%)
Query: 59 PQQDRQSRWAGCFSALSCFGSQKGGKRIVPAARIPDGNASTSRGNAHQSGSNSNQNVXXX 118
P ++ RW C+S SCFG+QK KRI A +P+ + G + NS +
Sbjct: 28 PSSSQKGRWGKCWSLYSCFGTQKNNKRIGNAVLVPE---PVTSGVPVVTVQNSATSTTVV 84
Query: 119 XXXXXXXXXXXXXXXXXXXXTAQSPNRFLSISAN--SPGGPTSNMFAVGPYANEPQLVSP 176
+ SP LS+++N SP P S +F VGPYANE Q V+P
Sbjct: 85 LPFIAPPSSPASFLQSDPSSVSHSPVGPLSLTSNTFSPKEPQS-VFTVGPYANETQPVTP 143
Query: 177 PVFSTYTTEPSTAPLTPPPELT-HATTPSSPDVPYARFLFSAMDL 220
PVFS + TEPSTAP TPPPE + H TTPSSP+VP+A+ L S+++L
Sbjct: 144 PVFSAFITEPSTAPYTPPPESSVHITTPSSPEVPFAQLLTSSLEL 188
>AT1G63720.1 | chr1:23636122-23637348 REVERSE LENGTH=359
Length = 358
Score = 82.4 bits (202), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 90/182 (49%), Gaps = 10/182 (5%)
Query: 53 RFHSQPPQQDRQSRWAGCFSALSCFGSQKGGKRIVPAARIPDGNASTSRGNAHQSGSNSN 112
R H P ++ +W +S L CFGS + KRI + +P+ + + + ++
Sbjct: 27 RLHQSSPIHKKR-KWWNRWSLLKCFGSSRQRKRIGNSVLVPE--PVSMSSSNSTTSNSGY 83
Query: 113 QNVXXXXXXXXXXXXXXXXXXXXXXXTAQSPNRFLSISANSPGGPTSNMFAVGPYANEPQ 172
++V QSP LS S P ++FA+GPYA+E Q
Sbjct: 84 RSVITTLPFIAPPSSPASFFQSEPPSATQSPVGILSFSP-LPCNNRPSIFAIGPYAHETQ 142
Query: 173 LVSPPVFSTYTTEPSTAPLTPPPE-----LTHATTPSSPDVPYARFLFSAMDLKTAGKDH 227
LVSPPVFSTYTTEPS+AP+TPP + LT TTPSSP+VP+A+ S + G
Sbjct: 143 LVSPPVFSTYTTEPSSAPITPPLDDSSIYLT-TTTPSSPEVPFAQLFNSNHQTGSYGYKF 201
Query: 228 NM 229
M
Sbjct: 202 PM 203
>AT4G25620.1 | chr4:13067447-13069296 REVERSE LENGTH=450
Length = 449
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 63/133 (47%), Gaps = 8/133 (6%)
Query: 60 QQDRQSRWAGCFSALSCFGSQKGGKRIVPAARIPDGNASTSRGNAHQSGSNSNQNVXXXX 119
Q+ R S W S CFGS+K KRI A +P+ AS + Q+ S+++ ++
Sbjct: 32 QKKRGSWW----SLYWCFGSKKNNKRIGHAVLVPEPAASGAAVAPVQNSSSNSTSIFMPF 87
Query: 120 XXXXXXXXXXXXXXXXXXXTAQSPNRFLSISANSPGGPTSNMFAVGPYANEPQLVSPPVF 179
P S++ N P + F +GPYA+E Q V+PPVF
Sbjct: 88 IAPPSSPASFLPSGPPSASHTPDPGLLCSLTVNEP----PSAFTIGPYAHETQPVTPPVF 143
Query: 180 STYTTEPSTAPLT 192
S +TTEPSTAP T
Sbjct: 144 SAFTTEPSTAPFT 156
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.311 0.127 0.372
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 11,103,063
Number of extensions: 461770
Number of successful extensions: 1872
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 1859
Number of HSP's successfully gapped: 5
Length of query: 540
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 437
Effective length of database: 8,282,721
Effective search space: 3619549077
Effective search space used: 3619549077
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 114 (48.5 bits)