BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0268100 Os03g0268100|AK065357
         (445 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G59210.1  | chr5:23890802-23893619 REVERSE LENGTH=435          309   2e-84

>AT5G59210.1 | chr5:23890802-23893619 REVERSE LENGTH=435
          Length = 434

 Score =  309 bits (792), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 191/459 (41%), Positives = 265/459 (57%), Gaps = 42/459 (9%)

Query: 1   MEANHASRGRRTLEEIRQKRAAERMQQQHNPAAAASLVDPYGNP--------------GA 46
           ME++HAS GRRTLEEIRQKRAA+R+ +  +    + + +P   P                
Sbjct: 1   MESHHASLGRRTLEEIRQKRAAQRLSKASSGPDLSEIPNPADFPVIRKSESGNRLSETDV 60

Query: 47  GAELLGRVRELENGNIALERENQMLLSKIAEKEVEKDSLVNRLNDLERNIVPSLKKAVND 106
           GA L  +++EL+  N  +E  N++L SK+  KEVE +SL  RLN LE+N VPSL+KA+ +
Sbjct: 61  GA-LYSQLKELQKKNAEMEERNKILSSKLQTKEVENESLETRLNVLEQNTVPSLRKALKE 119

Query: 107 ISXXXXXXXXXXXXXXXQLRSMKKRLKXXXXXXXXXXXXXXSLRAQLNTLQQQVMSNSYT 166
           I+               Q+R++K+R+               SLRA+LN++QQQ M NS+ 
Sbjct: 120 IAMEKDAAVVLREDLSAQVRTLKRRVNQAEEEQYRAEEDAASLRAELNSIQQQAMGNSFA 179

Query: 167 GF-PVGVSNEHILAMEKEVENLQAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGEQSH 225
           G  P+GVS + +  +EKE+ NL+                                 E+  
Sbjct: 180 GMSPMGVSPDQLPILEKEMANLK---------------LELQKESVLRQQEQHRLAEEQT 224

Query: 226 XXXXXXXXXXXXXXXXXXXXXXSDEASEFAARKAFSMEDREKLESQLHDMALMVERLEGS 285
                                 + E SE + +K FS+ED+EKLE QLHDMA+ +ERLE S
Sbjct: 225 RVASLMSEKQELEQKISVLSSRASEVSE-SGQKVFSVEDKEKLEKQLHDMAVALERLESS 283

Query: 286 RQKLLMEIDSQSSEIEKLFEENSALSTSYQEAVAVTMQWENQVKDCLKQNEELRSHLEKL 345
           RQKLLMEID+QSSEIEKLFEENS LS SYQE++ ++ QWENQVK+CLKQN ELR  L+KL
Sbjct: 284 RQKLLMEIDNQSSEIEKLFEENSNLSASYQESINISNQWENQVKECLKQNVELREVLDKL 343

Query: 346 RLEQATLLKTSNTTIQPDGQNETSISFPPEFVTENLSLKDQLIKEQSRSEGLSAEIMKLS 405
           R EQA       +  + +G +           T+ LSLK +L KEQSR+E LSA++++LS
Sbjct: 344 RTEQAGSFSRGPSEFEANGSH----------GTDTLSLKGELAKEQSRAESLSAQVLQLS 393

Query: 406 AELRKAVQAQNNLARLYRPVLRGIESNLMKMKQETYATI 444
           A+L++A QA N L R+Y+PVLR IES+L+K+KQ+   T+
Sbjct: 394 AQLQQATQAYNGLMRIYKPVLRNIESSLIKLKQDGSVTV 432



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.309    0.124    0.319 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,623,929
Number of extensions: 228466
Number of successful extensions: 1316
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1327
Number of HSP's successfully gapped: 2
Length of query: 445
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 343
Effective length of database: 8,310,137
Effective search space: 2850376991
Effective search space used: 2850376991
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 113 (48.1 bits)