BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0267300 Os03g0267300|AB007194
(406 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G54050.1 | chr3:20016951-20018527 FORWARD LENGTH=418 610 e-175
AT1G43670.1 | chr1:16468184-16470347 FORWARD LENGTH=342 330 9e-91
AT5G64380.1 | chr5:25741342-25743024 FORWARD LENGTH=405 274 7e-74
AT3G55800.1 | chr3:20709640-20711421 FORWARD LENGTH=394 95 7e-20
>AT3G54050.1 | chr3:20016951-20018527 FORWARD LENGTH=418
Length = 417
Score = 610 bits (1574), Expect = e-175, Method: Compositional matrix adjust.
Identities = 294/378 (77%), Positives = 323/378 (85%), Gaps = 2/378 (0%)
Query: 30 RRQPGRLAGGSSAPSVRCMXXXXXXXXXXXXXXXXXXXYEITTLTTWLLKQEQAGTIDGE 89
+R P + A VRCM YE+ TLT WLL+QE G ID E
Sbjct: 41 KRAPTGVRNHQYASGVRCMAVAADAAETKTAARKKSG-YELQTLTGWLLRQEMKGEIDAE 99
Query: 90 MTIVLASISTACKQIASLVQRAPISNLTGVQGAVNVQGEDQKKLDVVSNEVFSNCLKSSG 149
+TIV++SIS ACKQIASLVQRA ISNLTGVQGAVN+QGEDQKKLDV+SNEVFSNCL+SSG
Sbjct: 100 LTIVMSSISLACKQIASLVQRAGISNLTGVQGAVNIQGEDQKKLDVISNEVFSNCLRSSG 159
Query: 150 RTGVIASEEEDVPVAVEESYSGNYIVVFDPLDGSSNIDAAVSTGSIFGIYSPNDECLADI 209
RTG+IASEEEDVPVAVEESYSGNY+VVFDPLDGSSNIDAAVSTGSIFGIYSPNDEC+ D
Sbjct: 160 RTGIIASEEEDVPVAVEESYSGNYVVVFDPLDGSSNIDAAVSTGSIFGIYSPNDECIVDD 219
Query: 210 ADD-QNLDQVEQRCIVSVCQPGSNLLAAGYCMYSSSVIFVLTIGTGVYVFTLDPMYGEFV 268
+DD L EQRCIV+VCQPG+NLLAAGYCMYSSSVIFVLT+G GV+ FTLDPMYGEFV
Sbjct: 220 SDDISALGSEEQRCIVNVCQPGNNLLAAGYCMYSSSVIFVLTLGKGVFSFTLDPMYGEFV 279
Query: 269 LTQEKVQIPKAGKIYAFNEGNYALWDDKLKSYMDSLKEPGPSGKPYSARYIGSLVGDFHR 328
LTQE ++IPKAG+IY+FNEGNY +WDDKLK Y+D LK+PGP+GKPYSARYIGSLVGDFHR
Sbjct: 280 LTQENIEIPKAGRIYSFNEGNYQMWDDKLKKYIDDLKDPGPTGKPYSARYIGSLVGDFHR 339
Query: 329 TLLYGGIYGYPRDQKSKNGKLRLLYECAPMSFIVEQAGGKGSDGHQRILDIMPTEIHQRV 388
TLLYGGIYGYPRD KSKNGKLRLLYECAPMSFIVEQAGGKGSDGH R+LDI PTEIHQRV
Sbjct: 340 TLLYGGIYGYPRDAKSKNGKLRLLYECAPMSFIVEQAGGKGSDGHSRVLDIQPTEIHQRV 399
Query: 389 PLYIGSVEEVEKVEKFLA 406
PLYIGS EEVEK+EK+LA
Sbjct: 400 PLYIGSTEEVEKLEKYLA 417
>AT1G43670.1 | chr1:16468184-16470347 FORWARD LENGTH=342
Length = 341
Score = 330 bits (846), Expect = 9e-91, Method: Compositional matrix adjust.
Identities = 164/339 (48%), Positives = 224/339 (66%), Gaps = 15/339 (4%)
Query: 69 EITTLTTWLL-KQEQAGTIDGEMTIVLASISTACKQIASLVQRAPISNLTGVQGAVNVQG 127
++ T+T ++L +Q + G+ TI+L+ I CK + S V +A ++ L G+ G N+QG
Sbjct: 11 DLMTITRFVLNEQSKYPESRGDFTILLSHIVLGCKFVCSAVNKAGLAKLIGLAGETNIQG 70
Query: 128 EDQKKLDVVSNEVFSNCLKSSGRTGVIASEEEDVPVAVEESYSGNYIVVFDPLDGSSNID 187
E+QKKLDV+SN+VF N L SSGRT V+ SEE++ VE S G Y VVFDPLDGSSNID
Sbjct: 71 EEQKKLDVLSNDVFVNALVSSGRTSVLVSEEDEEATFVEPSKRGKYCVVFDPLDGSSNID 130
Query: 188 AAVSTGSIFGIYSPNDECLADIADDQNLDQVEQRCIVSVCQPGSNLLAAGYCMYSSSVIF 247
VS G+IFGIY+ LD ++ V +PG+ ++AAGYCMY SS +
Sbjct: 131 CGVSIGTIFGIYT--------------LDHTDEPTTADVLKPGNEMVAAGYCMYGSSCML 176
Query: 248 VLTIGTGVYVFTLDPMYGEFVLTQEKVQIPKAGKIYAFNEGNYALWDDKLKSYMDSLKEP 307
VL+ GTGV+ FTLDP GEF+LT ++IP G IY+ NEGN WD Y++ K P
Sbjct: 177 VLSTGTGVHGFTLDPSLGEFILTHPDIKIPNKGNIYSVNEGNAQNWDGPTTKYVEKCKFP 236
Query: 308 GPSGKPYSARYIGSLVGDFHRTLLYGGIYGYPRDQKSKNGKLRLLYECAPMSFIVEQAGG 367
S RY+GS+V D HRTLLYGGI+ YP D+KS NGKLR+LYE PMSF++EQAGG
Sbjct: 237 KDGSPAKSLRYVGSMVADVHRTLLYGGIFLYPADKKSPNGKLRVLYEVFPMSFLMEQAGG 296
Query: 368 KGSDGHQRILDIMPTEIHQRVPLYIGSVEEVEKVEKFLA 406
+ G +R LD++P +IH+R P+++GS ++VE+++ A
Sbjct: 297 QAFTGKKRALDLVPEKIHERSPIFLGSYDDVEEIKALYA 335
>AT5G64380.1 | chr5:25741342-25743024 FORWARD LENGTH=405
Length = 404
Score = 274 bits (700), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 145/322 (45%), Positives = 214/322 (66%), Gaps = 25/322 (7%)
Query: 89 EMTIVLASISTACKQIASLVQRAPISNLTGVQGAVNVQGEDQ---KKLDVVSNEVFSNCL 145
++ ++L + ACK+IASLV +P ++ G + G D+ K LD+VSN++ + L
Sbjct: 89 DLVVLLYHLQHACKRIASLVA-SPFNSSLGKLSVNSSSGSDRDAPKPLDIVSNDIVLSSL 147
Query: 146 KSSGRTGVIASEEEDVPVAVEESYSGNYIVVFDPLDGSSNIDAAVSTGSIFGIYSPNDEC 205
++SG+ V+ASEE D P +++ G Y+VV DPLDGS NIDA++ TG+IFGIY+ E
Sbjct: 148 RNSGKVAVMASEENDSPTWIKDD--GPYVVVVDPLDGSRNIDASIPTGTIFGIYNRLVE- 204
Query: 206 LADIADDQNLDQ--VEQRCIVSVCQPGSNLLAAGYCMYSSSVIFVLTIGTGVYVFTLDPM 263
LD VE++ ++ Q GS L+A+GY +YSS+ IF +T+G+G + FTLD
Sbjct: 205 ---------LDHLPVEEKAELNSLQRGSRLVASGYVLYSSATIFCVTLGSGTHAFTLDHS 255
Query: 264 YGEFVLTQEKVQIPKAGKIYAFNEGNYALWDDKLKSYMDSLKE-PGPSGKPYSARYIGSL 322
GEFVLT + ++IP G+IY+ N+ Y W + L+ Y+D++++ G + K YSARYI SL
Sbjct: 256 TGEFVLTHQNIKIPTRGQIYSVNDARYFDWPEGLRKYIDTVRQGKGQNPKKYSARYICSL 315
Query: 323 VGDFHRTLLYGGIYGYPRDQKSKNGKLRLLYECAPMSFIVEQAGGKGSDGHQRILDIMPT 382
V D HRTLLYGG+ PRD LRL+YE P++F+VEQAGGK SDG + IL I P
Sbjct: 316 VADLHRTLLYGGVAMNPRDH------LRLVYEGNPLAFLVEQAGGKSSDGKRGILSIQPV 369
Query: 383 EIHQRVPLYIGSVEEVEKVEKF 404
++HQR+PL++GS+E+V ++E +
Sbjct: 370 KLHQRLPLFLGSLEDVAELESY 391
>AT3G55800.1 | chr3:20709640-20711421 FORWARD LENGTH=394
Length = 393
Score = 94.7 bits (234), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 98/335 (29%), Positives = 157/335 (46%), Gaps = 58/335 (17%)
Query: 85 TIDGEMTIVLASISTACKQIASLVQRAPISNLTGVQGAVNVQGEDQKKLDVVSNEVFSNC 144
T D + +L + A + IA V+ A G VN G++Q +D++++++
Sbjct: 88 TPDKGLRTLLMCMGEALRTIAFKVRTASC----GGTACVNSFGDEQLAVDMLADKLLFEA 143
Query: 145 LKSSGRTGVIASEE----EDVPVAVEESYSGNYIVVFDPLDGSSNIDAAVSTGSIFGIYS 200
L+ S SEE +D+ VE G + V FDPLDGSS +D + G+IFG++
Sbjct: 144 LQYSHVCKYACSEEVPELQDMGGPVE----GGFSVAFDPLDGSSIVDTNFTVGTIFGVW- 198
Query: 201 PNDECLADIADDQNLDQVEQRCIVSVCQPGSNLLAAGYCMYSSSVIFVLTI----GTGVY 256
P D+ DQ +AA +Y +VL + GT +
Sbjct: 199 PGDKLTGITGGDQ--------------------VAAAMGIYGPRTTYVLAVKGFPGTHEF 238
Query: 257 VFTLDPMYGEFVLTQEKVQIPKAGKIYAFNEGNY-ALWDD----KLKSYMDSLKEPGPSG 311
+ LD G++ +E +I + GK+ F+ GN A +D+ KL Y +KE
Sbjct: 239 LL-LDE--GKWQHVKETTEIAE-GKM--FSPGNLRATFDNSEYSKLIDYY--VKEK---- 286
Query: 312 KPYSARYIGSLVGDFHRTLLY-GGIYGYPRDQKSKNGKLRLLYECAPMSFIVEQAGGKGS 370
Y+ RY G +V D ++ ++ GI+ +K KLRLL+E AP+ ++E AGG S
Sbjct: 287 --YTLRYTGGMVPDVNQIIVKEKGIFTNVTSPTAK-AKLRLLFEVAPLGLLIENAGGFSS 343
Query: 371 DGHQRILDIMPTEIHQRVPLYIGSVEEVEKVEKFL 405
DGH+ +LD + R + GS E+ + E+ L
Sbjct: 344 DGHKSVLDKTIINLDDRTQVAYGSKNEIIRFEETL 378
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.135 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,210,582
Number of extensions: 355766
Number of successful extensions: 787
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 779
Number of HSP's successfully gapped: 4
Length of query: 406
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 305
Effective length of database: 8,337,553
Effective search space: 2542953665
Effective search space used: 2542953665
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 113 (48.1 bits)