BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0266200 Os03g0266200|AK058348
         (256 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G29560.1  | chr2:12646635-12649694 FORWARD LENGTH=476          371   e-103
AT2G36530.1  | chr2:15321081-15323786 REVERSE LENGTH=445          306   1e-83
AT1G74030.1  | chr1:27839465-27841901 REVERSE LENGTH=478          292   1e-79

>AT2G29560.1 | chr2:12646635-12649694 FORWARD LENGTH=476
          Length = 475

 Score =  371 bits (952), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 165/252 (65%), Positives = 212/252 (84%)

Query: 1   AMQMGSETYHHLKDIILEKYGSNSCNIGDDGGFAPNISSITEGLDLVIEAINRAGYNGRI 60
           A+Q GSETYHHLK +I EK G   CN+G+DGG AP+ISS+ EGL+LV EAINR GYN +I
Sbjct: 223 ALQWGSETYHHLKAVISEKNGGLGCNVGEDGGLAPDISSLKEGLELVKEAINRTGYNDKI 282

Query: 61  KLAIDVAATDFCMGNKYDMEFKFAEKSGQGFKTADDLIEIYSQLCSEYPLVSIEQPFDKD 120
           K+AID+AAT+FC+G KYD++ K   KSGQ FK+A+D+I++Y ++C++YP+VSIE PFDK+
Sbjct: 283 KIAIDIAATNFCLGTKYDLDIKSPNKSGQNFKSAEDMIDMYKEICNDYPIVSIEDPFDKE 342

Query: 121 DWEHSKKFTTLELCQVVGDDLLMSDPERIKRAVNEYTCNALVLKANQVGTVTEAIEVVRQ 180
           DWEH+K F++L +CQVVGDDLLMS+ +R++RA+ E +CNAL+LK NQ+GTVTEAIEVV+ 
Sbjct: 343 DWEHTKYFSSLGICQVVGDDLLMSNSKRVERAIQESSCNALLLKVNQIGTVTEAIEVVKM 402

Query: 181 AKDAHWGVMVSHRSGDTDDSFIADLAVGAAAGQIKAGAPCRGECLSKYNQLLRIEEELGS 240
           A+DA WGV+ SHR G+T+DSFI+DL+VG A G IKAGAPCRGE   KYNQLLRIEEELG 
Sbjct: 403 ARDAQWGVVTSHRCGETEDSFISDLSVGLATGVIKAGAPCRGERTMKYNQLLRIEEELGD 462

Query: 241 DGVYAGENWRTT 252
             VYAGE+W+ +
Sbjct: 463 QAVYAGEDWKLS 474



>AT2G36530.1 | chr2:15321081-15323786 REVERSE LENGTH=445
          Length = 444

 Score =  306 bits (783), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 143/253 (56%), Positives = 191/253 (75%), Gaps = 3/253 (1%)

Query: 1   AMQMGSETYHHLKDIILEKYGSNSCNIGDDGGFAPNISSITEGLDLVIEAINRAGYNGRI 60
           AM+MG E YHHLK +I +KYG ++ N+GD+GGFAPNI    EGL+L+  AI +AGY G++
Sbjct: 186 AMKMGVEVYHHLKSVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLKTAIEKAGYTGKV 245

Query: 61  KLAIDVAATDFCMGNK-YDMEFKFAEKSGQGFKTADDLIEIYSQLCSEYPLVSIEQPFDK 119
            + +DVAA++F   +K YD+ FK    +G    + D L ++Y    +EYP+VSIE PFD+
Sbjct: 246 VIGMDVAASEFYSEDKTYDLNFKEENNNGSQKISGDALKDLYKSFVAEYPIVSIEDPFDQ 305

Query: 120 DDWEHSKKFTTL--ELCQVVGDDLLMSDPERIKRAVNEYTCNALVLKANQVGTVTEAIEV 177
           DDWEH  K TT      Q+VGDDLL+++P+R+ +A+ E +CNAL+LK NQ+G+VTE+IE 
Sbjct: 306 DDWEHYAKMTTECGTEVQIVGDDLLVTNPKRVAKAIAEKSCNALLLKVNQIGSVTESIEA 365

Query: 178 VRQAKDAHWGVMVSHRSGDTDDSFIADLAVGAAAGQIKAGAPCRGECLSKYNQLLRIEEE 237
           V+ +K A WGVM SHRSG+T+D+FIADLAVG + GQIK GAPCR E L+KYNQLLRIEEE
Sbjct: 366 VKMSKKAGWGVMTSHRSGETEDTFIADLAVGLSTGQIKTGAPCRSERLAKYNQLLRIEEE 425

Query: 238 LGSDGVYAGENWR 250
           LGS+ +YAG N+R
Sbjct: 426 LGSEAIYAGVNFR 438



>AT1G74030.1 | chr1:27839465-27841901 REVERSE LENGTH=478
          Length = 477

 Score =  292 bits (748), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 140/252 (55%), Positives = 187/252 (74%), Gaps = 2/252 (0%)

Query: 1   AMQMGSETYHHLKDIILEKYGSNSCNIGDDGGFAPNISSITEGLDLVIEAINRAGYNGRI 60
           A QMGSE YH LK II  KYG ++CN+GD+GGFAPN+    EGL L+I+AI +AGY G+I
Sbjct: 226 AFQMGSEVYHTLKGIIKTKYGQDACNVGDEGGFAPNVQDNREGLVLLIDAIEKAGYTGKI 285

Query: 61  KLAIDVAATDFCMGN-KYDMEFKFAEKSGQGFKTADDLIEIYSQLCSEYPLVSIEQPFDK 119
           K+ +DVAA++F M + +YD+ FK     G    +A+ L ++Y +   ++P+VSIE PFD+
Sbjct: 286 KIGMDVAASEFFMKDGRYDLNFKKQPNDGAHVLSAESLADLYREFIKDFPIVSIEDPFDQ 345

Query: 120 DDWEHSKKFTTLELCQVVGDDLLMSDPERIKRAVNEYTCNALVLKANQVGTVTEAIEVVR 179
           DDW       +    Q+VGDDLL+++P+RI  A+ + +CNAL+LK NQ+GTVTE+I+   
Sbjct: 346 DDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIKKQSCNALLLKVNQIGTVTESIQAAL 405

Query: 180 QAKDAHWGVMVSHRSGDTDDSFIADLAVGAAAGQIKAGAPCRGECLSKYNQLLRIEEELG 239
            +K A WGVMVSHRSG+T+D+FIADL+VG A+GQIK GAPCR E LSKYNQLLRIEEELG
Sbjct: 406 DSKAAGWGVMVSHRSGETEDNFIADLSVGLASGQIKTGAPCRSERLSKYNQLLRIEEELG 465

Query: 240 SDGVYAGENWRT 251
            +  YAGE +R+
Sbjct: 466 -NVRYAGEAFRS 476



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.316    0.133    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,675,869
Number of extensions: 233053
Number of successful extensions: 596
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 594
Number of HSP's successfully gapped: 3
Length of query: 256
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 160
Effective length of database: 8,474,633
Effective search space: 1355941280
Effective search space used: 1355941280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 110 (47.0 bits)