BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0266000 Os03g0266000|AK068775
         (224 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G38025.1  | chr2:15915239-15916692 REVERSE LENGTH=235          224   3e-59
AT3G57810.2  | chr3:21416336-21417809 FORWARD LENGTH=318           82   2e-16

>AT2G38025.1 | chr2:15915239-15916692 REVERSE LENGTH=235
          Length = 234

 Score =  224 bits (570), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 128/228 (56%), Positives = 150/228 (65%), Gaps = 15/228 (6%)

Query: 9   NATLLARLRDGEARFELLEDXXXXXXXXXXXXXVWPGLSC---------FSRVATSLRGG 59
           N  +L +LR+G ARFEL+               +               F+R+ +S+   
Sbjct: 8   NNNILEQLRNGFARFELVSSPTASVSDSISSTSLPASFISTTKGNSYVFFARINSSM--N 65

Query: 60  WSGALNKVEHYGVQRVTGDGRCMFRALVKGMAKNKGIPLTSREEVQDADDLRMAVKEVIC 119
            S A  KVE Y V RV GDGRC+FRALVKGMA NKGI L  + E  DAD+LRMAVKEVIC
Sbjct: 66  RSPAAKKVEKYAVDRVKGDGRCLFRALVKGMAFNKGITLNPQRERDDADELRMAVKEVIC 125

Query: 120 DDETERQKYEEAVIAITVDESLRRYCHRIRRSDFWGGESELLVLSKLCRQPIIIYIPERE 179
           +D  ER+KY+EA++AITVDESL+R+C RI R DFWGGESELLVLSKLC+QPII+YIPE E
Sbjct: 126 NDPKEREKYKEALVAITVDESLKRFCQRIGRHDFWGGESELLVLSKLCKQPIIVYIPEHE 185

Query: 180 Y---HGRGNGFIPIAEYGLEFSKD-SKQWKKKVPVRLLYSGRNHYDLL 223
           +    G G GFIPI EYG EF     K    K  VRLLYSGRNHYDLL
Sbjct: 186 HGRGGGYGPGFIPIQEYGSEFRGGWGKGKTNKNVVRLLYSGRNHYDLL 233



>AT3G57810.2 | chr3:21416336-21417809 FORWARD LENGTH=318
          Length = 317

 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 54/157 (34%), Positives = 80/157 (50%), Gaps = 22/157 (14%)

Query: 70  YGVQRVTGDGRCMFRALVKGMAKNKGIPLTSREEVQD--ADDLRMAVKEVICDDETERQK 127
           Y +  + GDGRC+FR++  G     G  L   E++Q   AD+LR  V     D+  +R++
Sbjct: 168 YSIIGIPGDGRCLFRSVAHGFCLRSG-KLAPGEKMQRELADELRTRV----ADEFIQRRQ 222

Query: 128 YEEAVIAITVDESLRRYCHRIRRSDFWGGESELLVLSKLCRQPIIIYIPEREYHGRGNGF 187
             E  +    D  +R+    IR    WGGE EL + S + + PI +Y+ +     +  G 
Sbjct: 223 ETEWFVEGDFDTYVRQ----IRDPHVWGGEPELFMASHVLQMPITVYMKD----DKAGGL 274

Query: 188 IPIAEYGLEFSKDSKQWKKKVPVRLLYSGRNHYDLLV 224
           I IAEYG E+ KD        P+R+LY G  HYD L+
Sbjct: 275 ISIAEYGQEYGKDD-------PIRVLYHGFGHYDALL 304



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.322    0.139    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,633,103
Number of extensions: 188188
Number of successful extensions: 423
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 419
Number of HSP's successfully gapped: 2
Length of query: 224
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 129
Effective length of database: 8,502,049
Effective search space: 1096764321
Effective search space used: 1096764321
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 110 (47.0 bits)