BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0262200 Os03g0262200|011-001-B11
(56 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G08500.1 | chr4:5404272-5407062 REVERSE LENGTH=609 82 5e-17
AT4G08480.1 | chr4:5388253-5391507 REVERSE LENGTH=774 77 2e-15
AT4G12020.2 | chr4:7201656-7209469 FORWARD LENGTH=1896 77 3e-15
AT4G08470.1 | chr4:5384030-5387038 REVERSE LENGTH=561 76 4e-15
AT1G63700.1 | chr1:23625208-23629031 REVERSE LENGTH=884 58 9e-10
AT1G09000.1 | chr1:2891111-2894987 FORWARD LENGTH=667 51 2e-07
AT4G26890.1 | chr4:13512072-13513406 FORWARD LENGTH=445 49 4e-07
AT1G53570.1 | chr1:19987391-19990733 FORWARD LENGTH=610 49 6e-07
AT1G54960.1 | chr1:20500058-20503587 FORWARD LENGTH=607 49 7e-07
>AT4G08500.1 | chr4:5404272-5407062 REVERSE LENGTH=609
Length = 608
Score = 82.4 bits (202), Expect = 5e-17, Method: Composition-based stats.
Identities = 36/54 (66%), Positives = 45/54 (83%)
Query: 3 QEDSKLYIFLELVTQGSLASLYQKYRLRDTHVSAYTRQILNGLTYLHERNIVHR 56
++ S LYIFLELVTQGSL LYQ+Y+LRD+ VS YTRQIL+GL YLH++ +HR
Sbjct: 402 KDGSNLYIFLELVTQGSLLKLYQRYQLRDSVVSLYTRQILDGLKYLHDKGFIHR 455
>AT4G08480.1 | chr4:5388253-5391507 REVERSE LENGTH=774
Length = 773
Score = 77.0 bits (188), Expect = 2e-15, Method: Composition-based stats.
Identities = 32/54 (59%), Positives = 44/54 (81%)
Query: 3 QEDSKLYIFLELVTQGSLASLYQKYRLRDTHVSAYTRQILNGLTYLHERNIVHR 56
++ S LYIFLELVTQGSL LY++Y++RD+ +S YT+QIL+GL YLH + +HR
Sbjct: 570 KDGSNLYIFLELVTQGSLLELYRRYQIRDSLISLYTKQILDGLKYLHHKGFIHR 623
>AT4G12020.2 | chr4:7201656-7209469 FORWARD LENGTH=1896
Length = 1895
Score = 76.6 bits (187), Expect = 3e-15, Method: Composition-based stats.
Identities = 34/54 (62%), Positives = 44/54 (81%)
Query: 3 QEDSKLYIFLELVTQGSLASLYQKYRLRDTHVSAYTRQILNGLTYLHERNIVHR 56
+++S LYIFLELVTQGSL LYQ+ +L D+ VS YTRQIL+GL YLH++ +HR
Sbjct: 1695 KDESNLYIFLELVTQGSLRKLYQRNQLGDSVVSLYTRQILDGLKYLHDKGFIHR 1748
>AT4G08470.1 | chr4:5384030-5387038 REVERSE LENGTH=561
Length = 560
Score = 75.9 bits (185), Expect = 4e-15, Method: Composition-based stats.
Identities = 35/51 (68%), Positives = 41/51 (80%)
Query: 6 SKLYIFLELVTQGSLASLYQKYRLRDTHVSAYTRQILNGLTYLHERNIVHR 56
SKLYIFLELVTQGS+ LY++Y+L T VS YTRQIL GL YLH++ VHR
Sbjct: 375 SKLYIFLELVTQGSVQKLYERYQLSYTVVSLYTRQILAGLNYLHDKGFVHR 425
>AT1G63700.1 | chr1:23625208-23629031 REVERSE LENGTH=884
Length = 883
Score = 58.2 bits (139), Expect = 9e-10, Method: Composition-based stats.
Identities = 27/53 (50%), Positives = 37/53 (69%), Gaps = 1/53 (1%)
Query: 5 DSKLYIFLELVTQGSLASLYQKY-RLRDTHVSAYTRQILNGLTYLHERNIVHR 56
D KLYI+LE V+ GS+ L Q+Y + + + YT+QIL+GL YLH +N VHR
Sbjct: 472 DDKLYIYLEYVSGGSIYKLLQEYGQFGENAIRNYTQQILSGLAYLHAKNTVHR 524
>AT1G09000.1 | chr1:2891111-2894987 FORWARD LENGTH=667
Length = 666
Score = 50.8 bits (120), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/56 (46%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 2 LQEDSKLYIFLELVTQGSLASLYQKY-RLRDTHVSAYTRQILNGLTYLHERNIVHR 56
++ED L I LE V GS++SL +K+ ++ V YTRQ+L GL YLH I+HR
Sbjct: 141 VREDDTLNILLEFVPGGSISSLLEKFGPFPESVVRTYTRQLLLGLEYLHNHAIMHR 196
>AT4G26890.1 | chr4:13512072-13513406 FORWARD LENGTH=445
Length = 444
Score = 49.3 bits (116), Expect = 4e-07, Method: Composition-based stats.
Identities = 24/48 (50%), Positives = 32/48 (66%), Gaps = 2/48 (4%)
Query: 10 IFLELVTQGSLASLYQKY--RLRDTHVSAYTRQILNGLTYLHERNIVH 55
I +E V+ G+L L + +L + + +YTRQILNGL YLHER IVH
Sbjct: 77 ILMEYVSGGNLHDLIKNSGGKLPEPEIRSYTRQILNGLVYLHERGIVH 124
>AT1G53570.1 | chr1:19987391-19990733 FORWARD LENGTH=610
Length = 609
Score = 48.5 bits (114), Expect = 6e-07, Method: Composition-based stats.
Identities = 24/53 (45%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 5 DSKLYIFLELVTQGSLASLYQKY-RLRDTHVSAYTRQILNGLTYLHERNIVHR 56
+ L ++LE V+ GS+ L + Y + + YTRQIL GL YLH RN VHR
Sbjct: 286 EETLSVYLEYVSGGSIHKLLKDYGSFTEPVIQNYTRQILAGLAYLHGRNTVHR 338
>AT1G54960.1 | chr1:20500058-20503587 FORWARD LENGTH=607
Length = 606
Score = 48.5 bits (114), Expect = 7e-07, Method: Composition-based stats.
Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 2 LQEDSKLYIFLELVTQGSLASLYQKY-RLRDTHVSAYTRQILNGLTYLHERNIVHR 56
++ED L I LE V GS++SL +K+ ++ V YT Q+L GL YLH I+HR
Sbjct: 95 VREDETLNILLEFVPGGSISSLLEKFGAFPESVVRTYTNQLLLGLEYLHNHAIMHR 150
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.324 0.138 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,046,234
Number of extensions: 27297
Number of successful extensions: 377
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 406
Number of HSP's successfully gapped: 10
Length of query: 56
Length of database: 11,106,569
Length adjustment: 29
Effective length of query: 27
Effective length of database: 10,311,505
Effective search space: 278410635
Effective search space used: 278410635
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 104 (44.7 bits)