BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0261900 Os03g0261900|AK059232
         (105 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G27640.1  | chr4:13798013-13802976 REVERSE LENGTH=1049         142   3e-35

>AT4G27640.1 | chr4:13798013-13802976 REVERSE LENGTH=1049
          Length = 1048

 Score =  142 bits (358), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 73/102 (71%), Positives = 79/102 (77%), Gaps = 1/102 (0%)

Query: 1   NVAEILDDSFAQYLPHVVPLAFSSCNLXXXXXXXXXXXX-XXXNGFSGVSSDDDVNDEPR 59
           NVAEILDD+FAQYLP V+PL F+SCNL                N F GVSSDDD +DEPR
Sbjct: 572 NVAEILDDTFAQYLPRVMPLVFASCNLDDGSAVDIDESDDENVNDFGGVSSDDDADDEPR 631

Query: 60  VRNISVRTGVLDEKAAATQAIGFFALHTKSAYAPYLEESLII 101
           VRNISVRTGVLDEKAAATQA+G FALHTKSA+APYLEESL I
Sbjct: 632 VRNISVRTGVLDEKAAATQALGLFALHTKSAFAPYLEESLKI 673



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.134    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,861,389
Number of extensions: 54179
Number of successful extensions: 111
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 110
Number of HSP's successfully gapped: 1
Length of query: 105
Length of database: 11,106,569
Length adjustment: 75
Effective length of query: 30
Effective length of database: 9,050,369
Effective search space: 271511070
Effective search space used: 271511070
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 104 (44.7 bits)