BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0261500 Os03g0261500|AK064904
         (298 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G22080.1  | chr5:7310600-7313540 REVERSE LENGTH=247            255   2e-68
AT1G65280.1  | chr1:24245501-24248521 FORWARD LENGTH=589           63   2e-10

>AT5G22080.1 | chr5:7310600-7313540 REVERSE LENGTH=247
          Length = 246

 Score =  255 bits (651), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 140/246 (56%), Positives = 158/246 (64%)

Query: 53  MASTDADEDQLLKSFLAEVSEAERDNEVLRILGCFKLNPFEHLKLSFDSSADEVKKQYRK 112
           M     D+D +LKSFLAEV E ERDNEV RIL CFKLNPFEHL LSFDSS D+VK+QYRK
Sbjct: 1   MGEVKVDDDAILKSFLAEVGEVERDNEVGRILSCFKLNPFEHLNLSFDSSTDDVKRQYRK 60

Query: 113 LSLLVHPDKCKHPKXXXXXXXXXXXXXXXXXXXERGYILDQVTXXXXXXXXXXXXXXXXD 172
           +SL+VHPDKCKHP+                   ER YIL QV                 D
Sbjct: 61  ISLMVHPDKCKHPQAQEAFGALAKAQQLLLNDQERDYILTQVHAAKEELKMKRKKQLKKD 120

Query: 173 SASKIKSQVDEGKYEEQYERSEEFQKQLIIKVREILTDKEWRRRKMQMRISXXXXXXXXX 232
           +ASKIKS VDEGK+E  YE+SEEFQK+L +KVREILTD+EWRRRKM MRIS         
Sbjct: 121 TASKIKSLVDEGKHEHIYEQSEEFQKELKLKVREILTDQEWRRRKMAMRISEEEGRLKKD 180

Query: 233 XXXTXXXXXXXXXXXXXXXXTRDQRVSSWRDFMKTGKKARKGEIKPPKLKTEDPNKSYVQ 292
                               TR++RVSSWRDF K GKKA+KGE +PPKLKTEDPNKSYVQ
Sbjct: 181 EAEQKEIWKKKREHEEQWEGTREKRVSSWRDFQKAGKKAKKGETRPPKLKTEDPNKSYVQ 240

Query: 293 RPVKRA 298
           RPVK+ 
Sbjct: 241 RPVKKG 246



>AT1G65280.1 | chr1:24245501-24248521 FORWARD LENGTH=589
          Length = 588

 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 29/59 (49%), Positives = 42/59 (71%)

Query: 68  LAEVSEAERDNEVLRILGCFKLNPFEHLKLSFDSSADEVKKQYRKLSLLVHPDKCKHPK 126
           +A  +EAER  EV RI+     +P++ L ++ + +AD +KK+Y KLSLLVHPDKC HP+
Sbjct: 283 VASSNEAERFEEVTRIMEADANSPYDVLGVNHNMAADNMKKRYWKLSLLVHPDKCSHPQ 341



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.313    0.129    0.360 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,539,425
Number of extensions: 138649
Number of successful extensions: 486
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 492
Number of HSP's successfully gapped: 2
Length of query: 298
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 200
Effective length of database: 8,419,801
Effective search space: 1683960200
Effective search space used: 1683960200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 111 (47.4 bits)