BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0261100 Os03g0261100|AK071135
         (153 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G06925.1  | chr2:2842475-2843212 REVERSE LENGTH=149            142   1e-34
AT4G29460.1  | chr4:14483066-14483930 REVERSE LENGTH=188           86   6e-18
AT2G19690.2  | chr2:8503326-8504635 FORWARD LENGTH=149             86   9e-18
AT4G29470.1  | chr4:14484591-14485714 REVERSE LENGTH=192           81   2e-16

>AT2G06925.1 | chr2:2842475-2843212 REVERSE LENGTH=149
          Length = 148

 Score =  142 bits (357), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 65/128 (50%), Positives = 89/128 (69%), Gaps = 4/128 (3%)

Query: 25  GLNIG-DLLGSTPAKDQGCSRTCESQFCTIAPLLRYGKYCGILYSGCPGERPCDALDACC 83
            LN+G  L+  + +  + CSR CES+FC++ P LRYGKYCG+LYSGCPGERPCD LD+CC
Sbjct: 20  ALNVGVQLIHPSISLTKECSRKCESEFCSVPPFLRYGKYCGLLYSGCPGERPCDGLDSCC 79

Query: 84  MVHDHCVDTHNDDYLNTMCNENLLSCIDRVSGA---TFPGNKCNVGQTASVIRGVIETAV 140
           M HD CV + N+DYL+  C++  ++C++  S     TF GNKC+  +   VI  V+E A+
Sbjct: 80  MKHDACVQSKNNDYLSQECSQKFINCMNNFSQKKQPTFKGNKCDADEVIDVISIVMEAAL 139

Query: 141 FAGKILHK 148
            AGK+L K
Sbjct: 140 IAGKVLKK 147



>AT4G29460.1 | chr4:14483066-14483930 REVERSE LENGTH=188
          Length = 187

 Score = 86.3 bits (212), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 46/113 (40%), Positives = 65/113 (57%), Gaps = 3/113 (2%)

Query: 31  LLGSTPAKDQGCSRTCESQFCTIAPLLRYGKYCGILYSGCPGERPCDALDACCMVHDHCV 90
           LL +  +  + CS TC +Q C  +  +RYGKYCGI Y GCPGE PCD LDACCM HD+CV
Sbjct: 18  LLLAVVSSQEKCSNTCIAQNCN-SLGIRYGKYCGIGYFGCPGEPPCDDLDACCMTHDNCV 76

Query: 91  DTHNDDYLNTMCNENLLSCIDRVSGATFPGNKCNVGQTASVIRGVIETAVFAG 143
           D     Y+N  C++    C++++S +    N   +G +      ++   VF G
Sbjct: 77  DLKGMTYVN--CHKQFKRCVNKLSKSIKHSNGEKIGFSTQCPYSIVIPTVFNG 127



>AT2G19690.2 | chr2:8503326-8504635 FORWARD LENGTH=149
          Length = 148

 Score = 85.5 bits (210), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 45/107 (42%), Positives = 61/107 (57%), Gaps = 3/107 (2%)

Query: 37  AKDQGCSRTCESQFCTIAPLLRYGKYCGILYSGCPGERPCDALDACCMVHDHCVDTHNDD 96
           A+ + C+RTC +Q C    + RYGKYCGI +SGCPGE PCD LDACC +HDHCV+   + 
Sbjct: 26  ARSEECTRTCIAQNCDTLSI-RYGKYCGIGHSGCPGEEPCDDLDACCKIHDHCVEL--NG 82

Query: 97  YLNTMCNENLLSCIDRVSGATFPGNKCNVGQTASVIRGVIETAVFAG 143
             N  C++    C++R+S A        VG +      V+   V  G
Sbjct: 83  MTNISCHKKFQRCVNRLSKAIKQSKNKKVGFSTKCPYSVVIPTVNQG 129



>AT4G29470.1 | chr4:14484591-14485714 REVERSE LENGTH=192
          Length = 191

 Score = 81.3 bits (199), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 45/119 (37%), Positives = 66/119 (55%), Gaps = 4/119 (3%)

Query: 25  GLNIGDLLGSTPAKDQGCSRTCESQFCTIAPLLRYGKYCGILYSGCPGERPCDALDACCM 84
           GL +  LL    ++++ CS+TC +Q C +  + RYGKYCGI Y GCPGE PCD LD CCM
Sbjct: 13  GLTVFLLLAVVHSQEK-CSKTCIAQKCNVLGI-RYGKYCGIGYFGCPGEPPCDDLDDCCM 70

Query: 85  VHDHCVDTHNDDYLNTMCNENLLSCIDRVSGATFPGNKCNVGQTASVIRGVIETAVFAG 143
            HD+CVD     Y++  C++    C++ +  +    N   VG +       +   V+ G
Sbjct: 71  THDNCVDLKGMTYVD--CHKQFQRCVNELKQSIQESNNQKVGFSKECPYSTVIPTVYRG 127



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.325    0.140    0.458 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,428,957
Number of extensions: 140611
Number of successful extensions: 295
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 291
Number of HSP's successfully gapped: 4
Length of query: 153
Length of database: 11,106,569
Length adjustment: 90
Effective length of query: 63
Effective length of database: 8,639,129
Effective search space: 544265127
Effective search space used: 544265127
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 107 (45.8 bits)