BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0259100 Os03g0259100|AK107381
(120 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G02850.1 | chr2:826630-827720 REVERSE LENGTH=130 114 2e-26
AT2G44790.1 | chr2:18462182-18463232 REVERSE LENGTH=203 76 5e-15
AT1G17800.1 | chr1:6128828-6129391 FORWARD LENGTH=141 72 8e-14
AT5G26330.1 | chr5:9241614-9242635 REVERSE LENGTH=188 67 1e-12
AT2G32300.1 | chr2:13722510-13723464 FORWARD LENGTH=262 67 2e-12
AT3G60270.1 | chr3:22278029-22278762 REVERSE LENGTH=188 66 4e-12
AT3G17675.1 | chr3:6042244-6042781 REVERSE LENGTH=107 65 1e-11
AT3G60280.1 | chr3:22279867-22280633 REVERSE LENGTH=223 63 3e-11
AT2G31050.1 | chr2:13212150-13212752 FORWARD LENGTH=201 62 4e-11
AT2G26720.1 | chr2:11384782-11385402 FORWARD LENGTH=207 61 1e-10
AT1G72230.1 | chr1:27188287-27189093 FORWARD LENGTH=182 60 2e-10
AT1G22480.1 | chr1:7934232-7935054 REVERSE LENGTH=175 60 2e-10
AT3G27200.1 | chr3:10043738-10044340 REVERSE LENGTH=175 57 2e-09
AT5G07475.1 | chr5:2364827-2365536 REVERSE LENGTH=193 56 5e-09
AT4G31840.1 | chr4:15401798-15402426 FORWARD LENGTH=178 54 2e-08
AT3G53330.1 | chr3:19772930-19773938 FORWARD LENGTH=311 52 5e-08
AT5G15350.1 | chr5:4985184-4986154 REVERSE LENGTH=173 52 5e-08
AT1G45063.1 | chr1:17033335-17034886 REVERSE LENGTH=370 52 7e-08
AT5G20230.1 | chr5:6826626-6827408 FORWARD LENGTH=197 50 2e-07
AT2G25060.1 | chr2:10662308-10662930 FORWARD LENGTH=183 50 3e-07
AT4G30590.1 | chr4:14935760-14936469 REVERSE LENGTH=191 48 9e-07
AT2G27035.1 | chr2:11535670-11536251 FORWARD LENGTH=164 48 1e-06
AT5G25090.1 | chr5:8647117-8647755 REVERSE LENGTH=187 46 4e-06
>AT2G02850.1 | chr2:826630-827720 REVERSE LENGTH=130
Length = 129
Score = 114 bits (284), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 56/100 (56%), Positives = 72/100 (72%), Gaps = 6/100 (6%)
Query: 26 DVAAAATYNVD----WSFGADSWSKGKNFRAGDVLVFSYDPSVHNVVAVDAGGYSGCR-E 80
D AATY V W+F A W KGK+FRAGDVLVF+Y+P +HNVV VD+G Y+ C+
Sbjct: 29 DYVQAATYTVGDSGIWTFNAVGWPKGKHFRAGDVLVFNYNPRMHNVVKVDSGSYNNCKTP 88
Query: 81 SGTK-YSSGNDRITLGRGTSYFICSFSGHCGAGMKMAVTA 119
+G K Y+SG DRITL +G ++FIC+F HC + MK+AVTA
Sbjct: 89 TGAKPYTSGKDRITLSKGQNFFICNFPNHCESDMKIAVTA 128
>AT2G44790.1 | chr2:18462182-18463232 REVERSE LENGTH=203
Length = 202
Score = 75.9 bits (185), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 45/97 (46%), Positives = 56/97 (57%), Gaps = 8/97 (8%)
Query: 28 AAAATYNVDWSFGAD--SWSKGKNFRAGDVLVFSYDPSVHNVVAVDAGGYSGCRESGT-- 83
A A TY ++W+ G D W+ GK FR GD+L F Y S H V VD GY GC S +
Sbjct: 27 AVAVTYTIEWTTGVDYSGWATGKTFRVGDILEFKYGSS-HTVDVVDKAGYDGCDASSSTE 85
Query: 84 KYSSGNDRITLGR-GTSYFICSFSGHC--GAGMKMAV 117
+S G+ +I L G +YFICS GHC GMK+AV
Sbjct: 86 NHSDGDTKIDLKTVGINYFICSTPGHCRTNGGMKLAV 122
>AT1G17800.1 | chr1:6128828-6129391 FORWARD LENGTH=141
Length = 140
Score = 71.6 bits (174), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 51/81 (62%), Gaps = 3/81 (3%)
Query: 42 DSWSKGKNFRAGDVLVFSYDPSVHNVVAVDAGGYSGCRES--GTKYSSGNDRITLGRGTS 99
D+W++GK F AGD+L F YD N++ V+ GY C + +YSSG+D+I L G +
Sbjct: 56 DTWARGKTFYAGDILEFKYDYQRFNLIVVNRTGYETCEANVGAIEYSSGDDKIQLNYGYN 115
Query: 100 YFICSFSGH-CGAGMKMAVTA 119
YFI +++ C G+KMA+ A
Sbjct: 116 YFIGTYTPEDCTTGLKMAIKA 136
>AT5G26330.1 | chr5:9241614-9242635 REVERSE LENGTH=188
Length = 187
Score = 67.4 bits (163), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 45/85 (52%), Gaps = 7/85 (8%)
Query: 34 NVDWSFGADSWSKGKNFRAGDVLVFSYDPSVHNVVAVDAGGYSGCRESG--TKYSSGNDR 91
NVD+ W+ K F GD ++F Y+P HNV+ V Y C S + +++GND
Sbjct: 37 NVDYKL----WASTKTFHIGDTVLFEYNPQFHNVMRVTHPMYRSCNTSKPISTFTTGNDS 92
Query: 92 ITL-GRGTSYFICSFSGHCGAGMKM 115
ITL G +F C GHC AG K+
Sbjct: 93 ITLTNHGHHFFFCGVPGHCLAGQKL 117
>AT2G32300.1 | chr2:13722510-13723464 FORWARD LENGTH=262
Length = 261
Score = 67.4 bits (163), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 47/86 (54%), Gaps = 5/86 (5%)
Query: 37 WSFGAD--SWSKGKNFRAGDVLVFSYDPSVHNVVAVDAGGYSGCR--ESGTKYSSGNDRI 92
W+ GA +W+ G+ F GD LVFSY + H+VV V + C+ + +++GN +
Sbjct: 34 WTVGASLRTWAAGQTFAVGDNLVFSYPAAFHDVVEVTKPEFDSCQAVKPLITFANGNSLV 93
Query: 93 TL-GRGTSYFICSFSGHCGAGMKMAV 117
L G YFIC GHC GMK+ V
Sbjct: 94 PLTTPGKRYFICGMPGHCSQGMKLEV 119
>AT3G60270.1 | chr3:22278029-22278762 REVERSE LENGTH=188
Length = 187
Score = 66.2 bits (160), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 47/86 (54%), Gaps = 6/86 (6%)
Query: 37 WSFGAD--SWSKGKNFRAGDVLVFSYDPSVHNVVAVDAGGYSGCRES--GTKYSSGNDRI 92
W+ G + SW K FR GD L F Y PS H+V V+ Y GC S +S G+ +I
Sbjct: 34 WTIGVEYTSWVSEKTFRVGDTLEFKYGPS-HSVAVVNKADYDGCETSRPTQSFSDGDTKI 92
Query: 93 TLGR-GTSYFICSFSGHCGAGMKMAV 117
L + G +F+C GHC GMK+AV
Sbjct: 93 DLTKVGAIHFLCLTPGHCSLGMKLAV 118
>AT3G17675.1 | chr3:6042244-6042781 REVERSE LENGTH=107
Length = 106
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 46/81 (56%), Gaps = 3/81 (3%)
Query: 43 SWSKGKNFRAGDVLVFSYDPSVHNVVAVDAGGYSGC--RESGTKYSSGNDRITLGR-GTS 99
+W++G+ F GDVLVF+Y HNV+ V++ Y+ C T ++ GND I L G
Sbjct: 25 NWTQGREFHVGDVLVFNYKSDQHNVMQVNSTAYTDCGLDNYTTLFTKGNDSIILSEVGKL 84
Query: 100 YFICSFSGHCGAGMKMAVTAS 120
+FIC HC G K+++ +
Sbjct: 85 WFICGVDDHCVNGQKLSINVA 105
>AT3G60280.1 | chr3:22279867-22280633 REVERSE LENGTH=223
Length = 222
Score = 63.2 bits (152), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 49/89 (55%), Gaps = 8/89 (8%)
Query: 32 TYNVDWSFGADSWSKGKNFRAGDVLVFSYDPSVHNVVAVDAGGYSGCRESG--TKYSSGN 89
T N+D++ W GK FR GD L F Y S H+V VD GY C SG ++ G+
Sbjct: 33 TSNLDYTV----WLTGKTFRVGDTLEFVYGLS-HSVSVVDKAGYDNCDSSGATQNFADGD 87
Query: 90 DRITLGR-GTSYFICSFSGHCGAGMKMAV 117
+I L GT +F+C GHC GMK+AV
Sbjct: 88 TKIDLTTVGTMHFLCPTFGHCKNGMKLAV 116
>AT2G31050.1 | chr2:13212150-13212752 FORWARD LENGTH=201
Length = 200
Score = 62.4 bits (150), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Query: 38 SFGADSWSKGKNFRAGDVLVFSYDPSVHNVVAVDAGGYSGCRESGT--KYSSGNDRITLG 95
S ++W+ F+ GD LVF Y+ H+V V Y C S +Y +G+D + L
Sbjct: 41 SVNYETWASTITFQVGDSLVFKYNKDFHDVTEVTHNDYEMCEPSKPLARYETGSDIVILT 100
Query: 96 R-GTSYFICSFSGHCGAGMKMAV 117
+ G +FIC F GHC G K+ +
Sbjct: 101 KPGLQHFICGFPGHCDMGQKLQI 123
>AT2G26720.1 | chr2:11384782-11385402 FORWARD LENGTH=207
Length = 206
Score = 60.8 bits (146), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 3/79 (3%)
Query: 42 DSWSKGKNFRAGDVLVFSYDPSVHNVVAVDAGGYSGCRESGT--KYSSGNDRITLGR-GT 98
++W+ + F+ GD LVF+Y+ H+V V + C S +Y +G+D I+L + G
Sbjct: 45 EAWASSRVFQVGDTLVFAYNKDYHDVTEVTHNDFEMCESSKPLRRYKTGSDSISLTKPGL 104
Query: 99 SYFICSFSGHCGAGMKMAV 117
+FIC GHC G K+ +
Sbjct: 105 QHFICGVPGHCKKGQKLQI 123
>AT1G72230.1 | chr1:27188287-27189093 FORWARD LENGTH=182
Length = 181
Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 52/95 (54%), Gaps = 6/95 (6%)
Query: 28 AAAATYNVDWSFGAD--SWSKGKNFRAGDVLVFSYDPSVHNVVAVDAGGYSGCR--ESGT 83
A++A++ V+WS G D S + GK+F GD +VF+Y + H V V Y C + +
Sbjct: 22 ASSASHPVEWSLGKDYSSLATGKSFAVGDTIVFNYG-AGHTVDEVSESDYKSCTLGNAIS 80
Query: 84 KYSSGNDRITLG-RGTSYFICSFSGHCGAGMKMAV 117
SSG I L G YFIC GHC GMK++V
Sbjct: 81 SDSSGTTSIALKTPGPHYFICGIPGHCTGGMKLSV 115
>AT1G22480.1 | chr1:7934232-7935054 REVERSE LENGTH=175
Length = 174
Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/98 (42%), Positives = 51/98 (52%), Gaps = 6/98 (6%)
Query: 28 AAAATYNVDWSFGAD--SWSKGKNFRAGDVLVFSYDPSVHNVVAVDAGGYSGCR--ESGT 83
A++A+ V+WS G D + GK F GD +VF+Y H V V Y C S T
Sbjct: 18 ASSASLTVNWSLGTDYTPLTTGKTFSVGDTIVFNYGAG-HTVDEVSENDYKSCTLGNSIT 76
Query: 84 KYSSGNDRITLGR-GTSYFICSFSGHCGAGMKMAVTAS 120
SSG I L G YFIC GHC AGMK+AVT +
Sbjct: 77 SDSSGTTTIALTTTGPRYFICGIPGHCAAGMKLAVTVA 114
>AT3G27200.1 | chr3:10043738-10044340 REVERSE LENGTH=175
Length = 174
Score = 57.0 bits (136), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 44/80 (55%), Gaps = 5/80 (6%)
Query: 42 DSWSKGKNFRAGDVLVFSYDPSVHNVVAV-DAGGYSGCR--ESGTKYSSGNDRITLGR-G 97
DSWS ++F+ GD +VF Y +H+VV + Y C S SSGND + L + G
Sbjct: 41 DSWSSDQSFKVGDQIVFKYSE-LHSVVELGSETAYKSCDLGTSVNSLSSGNDVVKLSKTG 99
Query: 98 TSYFICSFSGHCGAGMKMAV 117
T YF C GHC GMK+ V
Sbjct: 100 TRYFACGTVGHCEQGMKIKV 119
>AT5G07475.1 | chr5:2364827-2365536 REVERSE LENGTH=193
Length = 192
Score = 55.8 bits (133), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Query: 36 DWSFGADSWSKGKNFRAGDVLVFSYDPSVHNVVAVDAGGYSGCRESGT--KYSSGNDRIT 93
D S +SW+ GK F GDVL+F Y S H+V V Y C + +++GN +
Sbjct: 39 DISSDLESWTSGKRFSPGDVLMFQYS-STHSVYEVAKDNYQNCNTTDAIRTFTNGNTTVA 97
Query: 94 LGR-GTSYFICSFSGHCGAGMKMAV 117
L + G +F+C HC AGM++ V
Sbjct: 98 LSKPGNRFFVCGNRLHCFAGMRLLV 122
>AT4G31840.1 | chr4:15401798-15402426 FORWARD LENGTH=178
Length = 177
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Query: 38 SFGADSWSKGKNFRAGDVLVFSYDPSVHNVVAVDAGGYSGCRESGTK--YSSGNDRITLG 95
SF + W++ F+ GD +VF Y+ +V+ V Y C + K Y+ GN ++ L
Sbjct: 43 SFSFNEWAQKARFKVGDFIVFKYEAGKDSVLQVTREAYEKCNTTSPKASYTDGNTKVKLD 102
Query: 96 R-GTSYFICSFSGHCGAGMKMAV 117
+ G YF+ GHC G K+ +
Sbjct: 103 QAGPVYFVSGTEGHCQKGQKLRL 125
>AT3G53330.1 | chr3:19772930-19773938 FORWARD LENGTH=311
Length = 310
Score = 52.4 bits (124), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 44 WSKGKNFRAGDVLVFSYDPSVHNVVAV-DAGGYSGCRESGT--KYSSGNDRITLGR-GTS 99
WS+GK F D L F Y+ +++V + D + C + T Y +G+D I L + G
Sbjct: 207 WSEGKQFHVEDTLFFQYNKELNDVREITDELEFRSCESTSTVAVYKTGHDLIKLTKPGVH 266
Query: 100 YFICSFSGHCGAGMKMAVTAS 120
YF+ +G C AG+K+ VT
Sbjct: 267 YFVSLKTGLCQAGIKLRVTVQ 287
>AT5G15350.1 | chr5:4985184-4986154 REVERSE LENGTH=173
Length = 172
Score = 52.4 bits (124), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 44 WSKGKNFRAGDVLVFSYDPSVHNVVAVDAGGYSGCRESGTKYS----SGNDRITLGRGTS 99
W++GK+F GD L F +D + HN++ V+ Y GC + +G D +TL +
Sbjct: 46 WAQGKHFYLGDWLYFVFDRNQHNILEVNKTDYEGCIADHPIRNWTRGAGRDIVTLNQTKH 105
Query: 100 YFICSFSGHCGAGMKMAVTAS 120
Y++ G C GMK++V
Sbjct: 106 YYLLDGKGGCYGGMKLSVKVE 126
>AT1G45063.1 | chr1:17033335-17034886 REVERSE LENGTH=370
Length = 369
Score = 52.0 bits (123), Expect = 7e-08, Method: Composition-based stats.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 7/96 (7%)
Query: 26 DVAAAATYNVDWSFGADSWSKGKNFRAGDVLVFSYDPSVHNVVAVDAG-GYSGCRESG-- 82
D + Y+ D+ + +WSK K F GD L+F Y+ V+ V + + C +
Sbjct: 153 DSKSWGVYDSDFYY---NWSKEKQFNVGDGLLFEYNNEVNGVYEISGDLEFLNCDPTSPI 209
Query: 83 TKYSSGNDRITLGR-GTSYFICSFSGHCGAGMKMAV 117
+ +G+D I L + G YFI S GHCGAG+K+ V
Sbjct: 210 AVHKTGHDIIKLTKPGIHYFISSEPGHCGAGLKLQV 245
Score = 47.4 bits (111), Expect = 2e-06, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Query: 44 WSKGKNFRAGDVLVFSYDPSVHNVVAVDAG-GYSGCRESGTK--YSSGNDRITLGR-GTS 99
W++ K GD L+F YD ++++V V G Y C S K Y++G+D +T G+
Sbjct: 47 WTEDKEIHVGDSLIFEYDHNLNDVTQVSGGLEYEFCDSSFPKAVYNTGHDVVTFTEPGSY 106
Query: 100 YFICSFSGHCGAGMKMAV 117
YFI S C +G ++ V
Sbjct: 107 YFITSNHTQCTSGQRLGV 124
>AT5G20230.1 | chr5:6826626-6827408 FORWARD LENGTH=197
Length = 196
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 8/93 (8%)
Query: 34 NVDWSFGAD-----SWSKGKNFRAGDVLVFSYDPSVHNVVAVDAGGYSGCRESG--TKYS 86
+ +W+ D +W+ GK FR GD L F + H+V V + C + + +
Sbjct: 30 DTEWTRPMDPEFYTTWATGKTFRVGDELEFDFAAGRHDVAVVSEAAFENCEKEKPISHMT 89
Query: 87 SGNDRITLG-RGTSYFICSFSGHCGAGMKMAVT 118
+I L G YFIC+ HC G K+++T
Sbjct: 90 VPPVKIMLNTTGPQYFICTVGDHCRFGQKLSIT 122
>AT2G25060.1 | chr2:10662308-10662930 FORWARD LENGTH=183
Length = 182
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 9/92 (9%)
Query: 36 DWSFGADS------WSKGKNFRAGDVLVFSYDPSVHNVVAVDAGGYSGCRESGT--KYSS 87
DW S W++ F+ GD +VF Y+ +V+ V Y+ C + Y+
Sbjct: 39 DWKIPPSSSYSFTEWAQKARFKVGDFIVFRYESGKDSVLEVTKEAYNSCNTTNPLANYTD 98
Query: 88 GNDRITLGR-GTSYFICSFSGHCGAGMKMAVT 118
G ++ L R G YFI +GHC G K+++
Sbjct: 99 GETKVKLDRSGPFYFISGANGHCEKGQKLSLV 130
>AT4G30590.1 | chr4:14935760-14936469 REVERSE LENGTH=191
Length = 190
Score = 48.1 bits (113), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Query: 42 DSWSKGKNFRAGDVLVFSYDPSVHNVVAVDAGGYSGCRESGT--KYSSGNDRITLGR-GT 98
+ W++ F+ GD +V+ YD V +V+ V Y C + +Y+ GN ++ L + G
Sbjct: 48 NHWAENNRFKVGDFIVWKYDMKVDSVLQVTKEDYESCNTANPLKQYNDGNTKVALDKSGP 107
Query: 99 SYFICSFSGHCGAGMKMAVTA 119
+FI G+C G K+ +
Sbjct: 108 YFFISGAPGNCAKGEKITLVV 128
>AT2G27035.1 | chr2:11535670-11536251 FORWARD LENGTH=164
Length = 163
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 5/91 (5%)
Query: 32 TYNVDWSFGADSWSKGKNFRAGDVLVFSYDPSVHNVVAVDAGGYSGCRESGTKYSS---G 88
T+N D +F W+ + F +GD L F ++ + HN++ V+ Y C ++ ++ G
Sbjct: 36 TWNSDVNFS--DWANHQRFYSGDWLYFGFNRTRHNILQVNKSSYEQCVDNDYIFNITRGG 93
Query: 89 NDRITLGRGTSYFICSFSGHCGAGMKMAVTA 119
D L Y+ G+C GMK+A+T
Sbjct: 94 RDVFQLLEPKPYYFICGRGYCLKGMKLAITV 124
>AT5G25090.1 | chr5:8647117-8647755 REVERSE LENGTH=187
Length = 186
Score = 45.8 bits (107), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 42 DSWSKGKNFRAGDVLVFSYDPSVHNVVAVDAGGYSGCRESGT--KYSSGNDRITLGRGTS 99
+ W++ FR GD LV+ YD +V+ V Y C + YS+G+ ++ L R
Sbjct: 46 NKWAESLRFRVGDTLVWKYDEEKDSVLQVTKDAYINCNTTNPAANYSNGDTKVKLERSGP 105
Query: 100 YFICSFS-GHCGAGMKMAVTA 119
YF S S +C G K+ +
Sbjct: 106 YFFISGSKSNCVEGEKLHIVV 126
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.131 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,354,170
Number of extensions: 94279
Number of successful extensions: 271
Number of sequences better than 1.0e-05: 24
Number of HSP's gapped: 255
Number of HSP's successfully gapped: 25
Length of query: 120
Length of database: 11,106,569
Length adjustment: 86
Effective length of query: 34
Effective length of database: 8,748,793
Effective search space: 297458962
Effective search space used: 297458962
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 105 (45.1 bits)