BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0257600 Os03g0257600|Os03g0257600
(568 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G13340.1 | chr1:4569622-4571043 REVERSE LENGTH=410 92 1e-18
AT4G35730.1 | chr4:16931111-16933241 FORWARD LENGTH=467 89 6e-18
AT1G25420.1 | chr1:8916141-8917980 FORWARD LENGTH=324 77 2e-14
AT2G14830.1 | chr2:6362524-6365818 FORWARD LENGTH=455 76 6e-14
AT4G32350.1 | chr4:15617634-15620642 FORWARD LENGTH=733 69 5e-12
AT2G19710.1 | chr2:8506339-8509817 FORWARD LENGTH=938 69 5e-12
AT1G52315.1 | chr1:19481212-19482674 FORWARD LENGTH=348 67 3e-11
AT1G34220.1 | chr1:12463102-12465911 REVERSE LENGTH=650 67 4e-11
AT1G79910.1 | chr1:30055050-30057011 FORWARD LENGTH=382 66 5e-11
AT4G29440.1 | chr4:14473942-14477721 REVERSE LENGTH=1091 65 1e-10
AT3G15490.1 | chr3:5229785-5230646 FORWARD LENGTH=212 55 8e-08
>AT1G13340.1 | chr1:4569622-4571043 REVERSE LENGTH=410
Length = 409
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 102/182 (56%), Gaps = 17/182 (9%)
Query: 87 FLQAEQVIDEDNMLEVLDIVELYCKILIEQATQLDKPKECGEEIKEAAAGLMFASARCGD 146
+ + +QV+ + N L+VL + Y + +++ + ++C EE+ EA +GL+FA++R G+
Sbjct: 60 YHRVDQVVKDQNTLDVLFFIHGYFTLCLDRIHLFEHNRDCPEELLEAVSGLLFAASRIGE 119
Query: 147 LPELLDARAILADKFGRDFAAAAKD-GAHGVVDPTLVRKLSGAPASTEQKQRLTKVIAAE 205
PEL + R +L +FG+D AA + + ++ VDP +++KLS P E + + K IAAE
Sbjct: 120 FPELQEIRNVLISRFGKDLAARSIELRSNCGVDPKIIQKLSTRPPPKEVRMKALKEIAAE 179
Query: 206 NDILLEFPENT----------GDTDQGKQNEQARNVRAEQFVEQNEVKREHHEVQGRQRF 255
N+I+L+ + + G +D K +++ R E + + VKR G++++
Sbjct: 180 NNIVLKLDQASTSTEGTTNMQGTSDVSKTKLTSKDGRGEGYGLSDSVKR------GKKKY 233
Query: 256 VD 257
D
Sbjct: 234 KD 235
>AT4G35730.1 | chr4:16931111-16933241 FORWARD LENGTH=467
Length = 466
Score = 89.4 bits (220), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 49/135 (36%), Positives = 79/135 (58%), Gaps = 5/135 (3%)
Query: 88 LQAEQVIDEDNMLEVLDIVELYCKILIEQATQLDKPKECGEEIKEAAAGLMFASARCGDL 147
++ E VI E N+ +I+EL+C++++ + T + K K+C ++KE A L+FA+ RC ++
Sbjct: 74 IRVEHVIREQNIQAANEIIELFCELIVSRLTIITKQKQCPVDLKEGIASLIFAAPRCSEI 133
Query: 148 PELLDARAILADKFGRDFAAAAKDGAHGV-VDPTLVRKLSGAPASTEQKQRLTKVIAAEN 206
PEL D R I A K+G+DF +AA D V+ L+ KLS E K ++ K IA E
Sbjct: 134 PELGDLRDIFAKKYGKDFVSAATDLRPSCGVNRMLIDKLSVRNPGGEYKLKIMKEIAKE- 192
Query: 207 DILLEFPENTGDTDQ 221
+ +T +T+Q
Sbjct: 193 ---FQVDWDTTETEQ 204
>AT1G25420.1 | chr1:8916141-8917980 FORWARD LENGTH=324
Length = 323
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 70/122 (57%), Gaps = 1/122 (0%)
Query: 88 LQAEQVIDEDNMLEVLDIVELYCKILIEQATQLDKPKECGEEIKEAAAGLMFASARCGDL 147
++ E VI E N+ +I+EL+C+ ++ + L+ KEC E++EA A ++FA+ RC ++
Sbjct: 60 IRVEHVIREMNLWAAYEILELFCEFILARVPILESEKECPRELREAIASIIFAAPRCSEV 119
Query: 148 PELLDARAILADKFGRDFAAAAKDG-AHGVVDPTLVRKLSGAPASTEQKQRLTKVIAAEN 206
P+LL + + K+G++F A + V+ T++ KLS S + ++ K IA E
Sbjct: 120 PDLLQIKNLFGTKYGKEFIMVASELRPDSGVNRTIIEKLSPTSPSGAARLKMLKEIAQEY 179
Query: 207 DI 208
+
Sbjct: 180 SL 181
>AT2G14830.1 | chr2:6362524-6365818 FORWARD LENGTH=455
Length = 454
Score = 75.9 bits (185), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 82/170 (48%), Gaps = 29/170 (17%)
Query: 43 RGDVAQLLSIGHLDRALLRVCPCHAFALPDTRRDSSANSSRRVLFLQAEQVIDEDNMLEV 102
R D+AQLL IG DRAL R A+Q+ ++N++ +
Sbjct: 110 RNDIAQLLRIGERDRALHR----------------------------AQQLFLDENLMSL 141
Query: 103 LDIVELYCKILIEQATQLDKPKECGEEIKEAAAGLMFASARCGDLPELLDARAILADKFG 162
++ + I++ + + + ++ + I EA + L+FASARCGDLPEL R + ++G
Sbjct: 142 YHLLLHFSDIILLNLSYIRRRRDLPDGINEAVSTLVFASARCGDLPELRALRVLFGKRYG 201
Query: 163 RDFAAAAKDGAHG-VVDPTLVRKLSGAPASTEQKQRLTKVIAAENDILLE 211
F A + G V+P ++ KLS S + K +L I E ++ LE
Sbjct: 202 NHFVDTALNLLPGNCVNPQVIEKLSIISVSDDAKSKLLGEIVEEYNLRLE 251
>AT4G32350.1 | chr4:15617634-15620642 FORWARD LENGTH=733
Length = 732
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 63/122 (51%), Gaps = 8/122 (6%)
Query: 87 FLQAEQVIDEDNMLEVLDIVELYCKILIEQATQLDKPKECGEEIKEAAAGLMFASARCGD 146
F +A ++DE L LD VE C + +Q + + K EC E+ +EA + LMFA++ +
Sbjct: 56 FSRAGGLLDELRYLWSLDFVEQTCDFVYKQLSTMQKTPECPEDCREAISSLMFAASGFSE 115
Query: 147 LPELLDARAILADKFGRDFAAAAKDGAHGVVDPTLVRKLSGAPASTEQKQRLTKVIAAEN 206
LPEL + R + +K+ A V+ LV +S P S E+K +L + +A E
Sbjct: 116 LPELRELRQMFHEKYTDSLAL--------FVNQELVENMSSKPFSMEKKVKLMEDVALEF 167
Query: 207 DI 208
I
Sbjct: 168 SI 169
>AT2G19710.1 | chr2:8506339-8509817 FORWARD LENGTH=938
Length = 937
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 67/125 (53%), Gaps = 1/125 (0%)
Query: 88 LQAEQVIDEDNMLEVLDIVELYCKILIEQATQLDKPKECGEEIKEAAAGLMFASARCGDL 147
++ E V+ E+ + +++ +YC++L+ + ++ K C ++KEA ++FAS R D+
Sbjct: 57 IRVEHVVREEKTVAAYELIGIYCELLVVRLGVIESQKNCPIDLKEAVTSVLFASQRLSDV 116
Query: 148 PELLDARAILADKFGRDFAAAAKD-GAHGVVDPTLVRKLSGAPASTEQKQRLTKVIAAEN 206
PEL + K+G+DF+ +A + V LV KLS K ++ IA E+
Sbjct: 117 PELSEIFKQFTTKYGKDFSTSAVELRPDSGVSRLLVEKLSAKAPDGPTKVKILMAIAEEH 176
Query: 207 DILLE 211
+++ E
Sbjct: 177 NVVWE 181
>AT1G52315.1 | chr1:19481212-19482674 FORWARD LENGTH=348
Length = 347
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 69/123 (56%), Gaps = 9/123 (7%)
Query: 87 FLQAEQVIDEDNMLEVLDIVELYCKILIEQATQLDKPKECGEEIKEAAAGLMFASARCGD 146
+ +AE +++E ++ D++E +C + E + + K +EC EE +EA + L++A+A D
Sbjct: 56 YRRAELLLEELRIISCYDLIERFCDCISENLSLMLKKRECPEECREAVSSLIYATAWVPD 115
Query: 147 LPELLDARAILADKFGRDFAAAAKDGAHGVVDPT-LVRKLSGAPASTEQKQRLTKVIAAE 205
+PEL D RA+ +FG A++ H +V+ T L+R P S E K + K +A E
Sbjct: 116 VPELKDLRAVFTKRFGNFIASSVN---HELVEKTELLR-----PPSRELKIQTVKDVANE 167
Query: 206 NDI 208
I
Sbjct: 168 FSI 170
>AT1G34220.1 | chr1:12463102-12465911 REVERSE LENGTH=650
Length = 649
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 53/84 (63%)
Query: 88 LQAEQVIDEDNMLEVLDIVELYCKILIEQATQLDKPKECGEEIKEAAAGLMFASARCGDL 147
++ E +I E+ M+ +I+EL+C+++ + ++ +EC ++KEA + + FA+ RC DL
Sbjct: 60 IRVEHIIREEKMMAAQEILELFCELIAVRLPIIEAQRECPLDLKEAISSVCFAAPRCSDL 119
Query: 148 PELLDARAILADKFGRDFAAAAKD 171
EL + + K+G++F AAA +
Sbjct: 120 TELQQVQILFVSKYGKEFVAAASE 143
>AT1G79910.1 | chr1:30055050-30057011 FORWARD LENGTH=382
Length = 381
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 61/120 (50%), Gaps = 8/120 (6%)
Query: 89 QAEQVIDEDNMLEVLDIVELYCKILIEQATQLDKPKECGEEIKEAAAGLMFASARCGDLP 148
+AE +I+E L + +E +C + + L K C +E +EA + L++A+AR ++P
Sbjct: 58 RAEGLIEEKRRLACYEFLEQFCNCVASNVSLLQKSIRCPDECREAISSLVYAAARVSEVP 117
Query: 149 ELLDARAILADKFGRDFAAAAKDGAHGVVDPTLVRKLSGAPASTEQKQRLTKVIAAENDI 208
EL D R++ A+++G + V+P V + P S E K L + IA E I
Sbjct: 118 ELRDLRSLFAERYG--------NTLDQFVNPEFVERFKAEPPSKEMKVELLQEIAREYSI 169
>AT4G29440.1 | chr4:14473942-14477721 REVERSE LENGTH=1091
Length = 1090
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 67/128 (52%), Gaps = 7/128 (5%)
Query: 88 LQAEQVIDEDNMLEVLDIVELYCKILIEQATQLDKPKECGEEIKEAAAGLMFASARCGDL 147
++ E V+ E+ + ++V +YC++L+ + +D K C ++KEA A +++AS R D+
Sbjct: 57 IRVEHVVREEKTVAAYELVGIYCELLVARLGVIDSQKTCPNDLKEAVASVLYASQRLTDV 116
Query: 148 PELLDARAILADKFGRDFAAAA----KDGAHGVVDPTLVRKLSGAPASTEQKQRLTKVIA 203
EL D + K+G+DF +AA D V LV KLS K ++ IA
Sbjct: 117 GELSDIVKHFSAKYGKDFVSAAIGLQPDSG---VSRLLVEKLSVKAPDGPTKIKILTEIA 173
Query: 204 AENDILLE 211
++++ E
Sbjct: 174 TQHNVTWE 181
>AT3G15490.1 | chr3:5229785-5230646 FORWARD LENGTH=212
Length = 211
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 68/149 (45%), Gaps = 32/149 (21%)
Query: 42 ARGDVAQLLSIGHLDRALLRVCPCHAFALPDTRRDSSANSSRRVLFLQAEQVIDEDNMLE 101
+R D+AQLLS G ++ ALP +A+Q +++ L
Sbjct: 5 SRSDIAQLLSYGR-----------YSEALP-----------------KAKQFYEDERRLS 36
Query: 102 VLDIVELYCKILIEQATQLDKPKECG---EEIKEAAAGLMFASARCGDLPELLDARAILA 158
D VEL+C +++ + L EE K+A AG++FA++R G+L +L R+
Sbjct: 37 AYDQVELFCTTILQNISSLKYENNVDLLPEETKKAMAGIIFAASRIGELEDLQHIRSFFV 96
Query: 159 DKFGRDFAAAAKDGAHG-VVDPTLVRKLS 186
+FG F D G VV +V+ L+
Sbjct: 97 QRFGLKFDKECVDLRQGNVVGFEIVKILN 125
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.315 0.132 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 10,304,614
Number of extensions: 405241
Number of successful extensions: 864
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 860
Number of HSP's successfully gapped: 11
Length of query: 568
Length of database: 11,106,569
Length adjustment: 104
Effective length of query: 464
Effective length of database: 8,255,305
Effective search space: 3830461520
Effective search space used: 3830461520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 114 (48.5 bits)