BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0251800 Os03g0251800|AK067333
         (527 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G12610.2  | chr4:7455565-7458318 FORWARD LENGTH=507            155   6e-38

>AT4G12610.2 | chr4:7455565-7458318 FORWARD LENGTH=507
          Length = 506

 Score =  155 bits (391), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 137/407 (33%), Positives = 187/407 (45%), Gaps = 42/407 (10%)

Query: 153 MHGKDVHAVPADSWYNFSKISQYKQLTLEEAEEKMSRRRSTATGYGRWMMKAATNGAAAF 212
           M  K+  A+PA SWYNF+K++QYKQLTLEEAEEKM  RR TA GY RWMMKAA NG A F
Sbjct: 1   MQNKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRRKTADGYQRWMMKAANNGPALF 60

Query: 213 SSDVTQLDDANEGETDQVHLKKGNKNGDE---NKSDKGSGEERAHVPMTKGREEEGSKDR 269
             +V    ++          +K +  GDE   N SD+G  +E       K R     K  
Sbjct: 61  -GEVDNEKESGGTSGGGGRGRKKSSGGDEEEGNVSDRGDEDEEEEA-SRKSRLGLNRKSN 118

Query: 270 DFDLDDEIEKG-------------DDWEHEEIFTXXXXXXXXXXXXXXXLADPEIPAPPE 316
           D D D+E  +G             DDWEHEEIFT               L  PEIPAPPE
Sbjct: 119 DDD-DEEGPRGGDLDMDDDDIEKGDDWEHEEIFTDDDEAVGNDPEEREDLLAPEIPAPPE 177

Query: 317 IKQDDNEKHXXXXXXXXXXXXXXXXRRAAGQNXXXXXXXXXXXXXXPS------PVLAPK 370
           IKQD++++                 +     N                       V   K
Sbjct: 178 IKQDEDDEENEEEEGGLSKSGKELKKLLGKANGLDESDEDDDDDSDDEEETNYGTVTNSK 237

Query: 371 QQDQLKSEPQEDNHSKPTVLGHPYSTPHVSKSNQKRRQRGDDSK--TCATPKKPKIEPDT 428
           Q++  K EP ++  +KP   G P  TP    S  KR+    DSK  + +  KK K E D 
Sbjct: 238 QKEAAKEEPVDNAPAKPAPSGPPRGTPPAKPSKGKRKLNDGDSKKPSSSVQKKVKTENDP 297

Query: 429 KKIVVKEETSCSLEPTSEPFASARSD----------TNVSPITVEEIRVVLRLYAPIAMR 478
           K   +KEE + ++  ++ P  + +++              P+T +EIR VL     +   
Sbjct: 298 KS-SLKEERANTVSKSNTPTKAVKAEPASAPASSSSAATGPVTEDEIRAVLMEKKQVT-- 354

Query: 479 DFSKDFMPRFSPRLRSPEDREVFLANLRKISHLQKINGQKYIILLEE 525
             ++D + RF  RL++ ED+  F   LRKIS +QK  G +  ++L E
Sbjct: 355 --TQDLVSRFKARLKTKEDKNAFANILRKISKIQKNAGSQNFVVLRE 399



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.312    0.129    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 11,794,939
Number of extensions: 525051
Number of successful extensions: 1824
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1818
Number of HSP's successfully gapped: 2
Length of query: 527
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 424
Effective length of database: 8,282,721
Effective search space: 3511873704
Effective search space used: 3511873704
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 114 (48.5 bits)