BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0244000 Os03g0244000|AK061036
         (154 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G75690.1  | chr1:28422273-28423170 REVERSE LENGTH=155          140   3e-34

>AT1G75690.1 | chr1:28422273-28423170 REVERSE LENGTH=155
          Length = 154

 Score =  140 bits (352), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 66/110 (60%), Positives = 72/110 (65%)

Query: 45  DLDQNTXXXXXXXXXXXXXXXXXPVFYETQIDNAAKRDNTQPCFPCSGSGAQVCRFCXXX 104
           +LD NT                 PVFYETQIDNAAKR+NTQPCFPC+G+GAQ CR C   
Sbjct: 45  ELDPNTVVAISVGVASVALGIGIPVFYETQIDNAAKRENTQPCFPCNGTGAQKCRLCVGS 104

Query: 105 XXXXXXXXXXXXXXSNCVNCDGVGSLTCTTCQGSGIQPRYLDRREFKDDD 154
                         SNC+NCDG GSLTCTTCQGSG+QPRYLDRREFKDDD
Sbjct: 105 GNVTVELGGGEKEVSNCINCDGAGSLTCTTCQGSGVQPRYLDRREFKDDD 154



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.131    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,378,537
Number of extensions: 59688
Number of successful extensions: 163
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 163
Number of HSP's successfully gapped: 1
Length of query: 154
Length of database: 11,106,569
Length adjustment: 90
Effective length of query: 64
Effective length of database: 8,639,129
Effective search space: 552904256
Effective search space used: 552904256
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 107 (45.8 bits)