BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0243300 Os03g0243300|AB037151
         (402 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G38630.1  | chr4:18057357-18059459 REVERSE LENGTH=387          318   3e-87

>AT4G38630.1 | chr4:18057357-18059459 REVERSE LENGTH=387
          Length = 386

 Score =  318 bits (815), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 155/235 (65%), Positives = 178/235 (75%), Gaps = 2/235 (0%)

Query: 1   MVLEATMICIDNSEWMRNGDYSPSRFQAQADAVNLICGAKTQSNPENTVGVMTMAGKGVR 60
           MVLEATMICIDNSEWMRNGDYSPSR QAQ +AVNL+CGAKTQSNPENTVG++TMAGKGVR
Sbjct: 1   MVLEATMICIDNSEWMRNGDYSPSRLQAQTEAVNLLCGAKTQSNPENTVGILTMAGKGVR 60

Query: 61  VLVTPTSDLGKILACMHGLEVGXXXXXXXXXXXXXXXXKHRQNKRQQQRIIAFIGSPVKY 120
           VL TPTSDLGKILACMHGL+VG                KHRQNK Q+QRII F GSP+KY
Sbjct: 61  VLTTPTSDLGKILACMHGLDVGGEINLTAAIQIAQLALKHRQNKNQRQRIIVFAGSPIKY 120

Query: 121 DKKVLETIGKKLKKNNVALDIVDFGETDD-DKPEKLEALISAVNSSDSSHIVHVPPGENA 179
           +KK LE +GK+LKKN+V+LDIV+FGE DD +KP+KLEAL++AVN++D SHIVHVP G NA
Sbjct: 121 EKKALEIVGKRLKKNSVSLDIVNFGEDDDEEKPQKLEALLTAVNNNDGSHIVHVPSGANA 180

Query: 180 LSDVLISTPIXXXXXXXXXXXXXXXXXXXXXXXXXXXDVDPNVDPELALALRLSM 234
           LSDVL+STP+                            VDPN+DPELALALR+SM
Sbjct: 181 LSDVLLSTPVFTGDEGASGYVSAAAAAAAAGGDFDFG-VDPNIDPELALALRVSM 234




 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 30/32 (93%)

Query: 350 VFEDRSFVTSILNSLPGVDPNDPSVKDLLASL 381
           +  +++F++S+L+SLPGVDPNDP+VK+LLASL
Sbjct: 333 LLGNQAFISSVLSSLPGVDPNDPAVKELLASL 364



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.312    0.129    0.358 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,633,070
Number of extensions: 175482
Number of successful extensions: 416
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 413
Number of HSP's successfully gapped: 2
Length of query: 402
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 301
Effective length of database: 8,337,553
Effective search space: 2509603453
Effective search space used: 2509603453
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 113 (48.1 bits)