BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0240900 Os03g0240900|AK073420
(571 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G37190.1 | chr4:17507155-17509512 FORWARD LENGTH=563 559 e-159
>AT4G37190.1 | chr4:17507155-17509512 FORWARD LENGTH=563
Length = 562
Score = 559 bits (1441), Expect = e-159, Method: Compositional matrix adjust.
Identities = 291/573 (50%), Positives = 379/573 (66%), Gaps = 13/573 (2%)
Query: 1 MREAVTVQVGGFANYVGSHFWNFQDELLGLXXXXXXXXVFKNDALDMDVLYRSGETHQGI 60
MRE VT+QVG FAN+VGSHFWNFQDELLGL +F+N LDMDVLYRSGET QG+
Sbjct: 1 MREIVTIQVGEFANFVGSHFWNFQDELLGLASDPESDPIFRNHNLDMDVLYRSGETQQGV 60
Query: 61 PTYCPXXXXXXXXXXXXXXXXXXXXXQTSASADQLNVATWSGSVTRSVSKPHGRNLFLQS 120
TY P +S+ + ATW G V S+P RNLFLQS
Sbjct: 61 ATYTPRLVSVNLKGALGTMSSRGTLYNEGSSSRSDSSATWFGDVDTQRSEPRKRNLFLQS 120
Query: 121 LVEEGQNPSTSNGASNSQKSVEDKDLIDCLENSVNFWTDYSKVQYHPQSLYELHGSWTDF 180
L EE K +EDKD++ CL+ V WTD+SK YHPQSLYEL+G W D
Sbjct: 121 LYEEEHVVGKEKA-----KEIEDKDIVGCLDEEVECWTDFSKSHYHPQSLYELNGLWMDS 175
Query: 181 DKFDNYGSAQEVVSDWSQIEEMNERLRFFVEECDHIQGIQFIVDDSGGFSSVAAQFLENI 240
F+NYG ++V S+ S+ EE+ +RLRFFVEECDHIQGI+F+VDDSGGFS+VAA FLEN+
Sbjct: 176 QAFNNYGIGKDVFSEASRGEEICDRLRFFVEECDHIQGIKFLVDDSGGFSAVAADFLENM 235
Query: 241 ADDYTNTPVLLYCVRDPMTLGSSRRNQRESIMRALHDAVSFSKLSSFCNLMVPIGPPXXX 300
AD+YTN PVLLY VR PM+ SS++ ++ LHDA+SFS+LSSFC L PIG P
Sbjct: 236 ADEYTNVPVLLYSVRTPMSQMSSKK----TVSNKLHDAISFSRLSSFCKLFTPIGLPSLT 291
Query: 301 XXXXXXXXXIQDEKPFHASAVCAAAIHSITVPFRLQRTGPSSDLAHSSGNLDIGELLHIL 360
+ DEKP+ +SAV AAA+HS T+PFR+Q T SSD + S ++D+ L+ +L
Sbjct: 292 GSKASKFLNLGDEKPYRSSAVYAAALHSSTIPFRMQPT--SSDSSEVSNSMDVNTLVQLL 349
Query: 361 SDQGRQNMVTALDVAMPAPSLTDRDAMGNIEMKLHSLTPEISDEDEDPYSVESLVVHGAL 420
+ +GRQN+V LD AMPAP+L + + L +LTPE++++ ED +VES+ + GAL
Sbjct: 350 TGRGRQNIVAILDSAMPAPTLAGKQLENTLLTSLQALTPEVTEDVEDNQAVESMCILGAL 409
Query: 421 DKGGQRTSISQVKGSVCSVYEARET--KPKFSHLSASLCPLPVPLPFPSIFRGNIGRHGE 478
+ +S+VK +V + YE T KP F +LS S CPLPVPLPFPSIF +GR GE
Sbjct: 410 RSEDKEALVSEVKNAVDASYEQATTKGKPLFCNLSVSRCPLPVPLPFPSIFGNLVGRKGE 469
Query: 479 ILSDHAEESQPKGSLDIESIPMAARLRSSSAVLPFIERRSGSLQKHGVARGAIGSLVLRD 538
ILS +S +GSLD+ SIP+A R RSSSA+LPF+E R G+L+K G+ GA+GS V+R
Sbjct: 470 ILSSPVSDSLYRGSLDVHSIPVATRWRSSSAILPFLETRMGNLEKLGIQWGAMGSDVVRA 529
Query: 539 WGFGREEVEDMAEHLAKLLGPFHPEMDLTSDSD 571
WGFGREE+++M E+L+K++ +P+ +SDSD
Sbjct: 530 WGFGREELQEMRENLSKMVSELNPQFFESSDSD 562
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.316 0.132 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 11,904,372
Number of extensions: 488823
Number of successful extensions: 1252
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1247
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 11,106,569
Length adjustment: 104
Effective length of query: 467
Effective length of database: 8,255,305
Effective search space: 3855227435
Effective search space used: 3855227435
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 114 (48.5 bits)