BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0233000 Os03g0233000|AK069495
(350 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G23790.1 | chr2:10125692-10127455 REVERSE LENGTH=337 183 1e-46
AT4G36820.1 | chr4:17346889-17347994 FORWARD LENGTH=339 170 1e-42
AT5G66650.1 | chr5:26603204-26604257 REVERSE LENGTH=322 164 5e-41
AT5G42610.1 | chr5:17062507-17063934 FORWARD LENGTH=294 162 2e-40
AT1G09575.1 | chr1:3101851-3102832 REVERSE LENGTH=293 110 8e-25
AT1G57610.1 | chr1:21337449-21338412 REVERSE LENGTH=294 108 6e-24
>AT2G23790.1 | chr2:10125692-10127455 REVERSE LENGTH=337
Length = 336
Score = 183 bits (465), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 108/297 (36%), Positives = 140/297 (47%), Gaps = 33/297 (11%)
Query: 41 DDCPTLAYLRPRPGTIRYTTASVPLPAHCFPA----LPVGDQLF----------NRLRLD 86
+D + P PG + + + A PA +PVG+ L +R+RLD
Sbjct: 40 NDSTDTTKIAPEPGDLAMSRRFMHNSAMIRPAEIMQMPVGESLIEKLREIDGSKDRIRLD 99
Query: 87 GLVPPTTAVTRPPXXXXXXXXXXXXXXXXXXXXXXXXXXXLRSNAQSVVSGSEFAALCVD 146
GL PP + LR +S + EF ++C +
Sbjct: 100 GLSPPERETS---------LTVADTKKLLRAAQIEIVKSKLRETGRSWMPYKEFVSVCGE 150
Query: 147 IXXXXXXXXXXXXXXDDSGVVIVLGDAVFLRPDMIAKAIGSMIPXXXXXXXXXXXXXXXX 206
DDS VIVLGD+V +RPD + K+I ++P
Sbjct: 151 ASSDPDLGSKIAKMLDDSANVIVLGDSVCIRPDQVTKSIEGLLPLPKIHNPNDPRRIEFK 210
Query: 207 XXXXXXXXXXXXXXXXXGIDXXXXXQVRRELWCGLGLLAAQTLGFMRLTFWELSWDVMEP 266
ID VR+ELW GLG L QT GFMRLTFWELSWDVMEP
Sbjct: 211 ELEAEKAV----------IDVKAHTLVRKELWAGLGYLILQTAGFMRLTFWELSWDVMEP 260
Query: 267 VCFYVTSLYFMSGYAFFMRTSTEPSFEGFYRSRLASRQRRLMRARSFDVARYEALKE 323
+CFYVTS+YFM+GYAFF+RTS EPSFEGFY+SR ++QR+LM FD+ RY LK+
Sbjct: 261 ICFYVTSVYFMAGYAFFLRTSKEPSFEGFYQSRFEAKQRKLMNEYEFDLERYNELKK 317
>AT4G36820.1 | chr4:17346889-17347994 FORWARD LENGTH=339
Length = 338
Score = 170 bits (430), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 94/265 (35%), Positives = 127/265 (47%), Gaps = 18/265 (6%)
Query: 59 TTASVPLPAHCFPALPVGDQLFNRLRLDGLVPPTTAVTRPPXXXXXXXXXXXXXXXXXXX 118
TT+ + + L D +R+RLDGL P
Sbjct: 73 TTSKMSIGESLMEKLKEMDMNKDRIRLDGLSHPKEET--------LGLTVQDVKKLLRAA 124
Query: 119 XXXXXXXXLRSNAQSVVSGSEFAALCVDIXXXXXXXXXXXXXXDDSGVVIVLGDAVFLRP 178
L + + S+F +C D DDSG VIV+G++V LRP
Sbjct: 125 EIEVIKTKLMETGKIWIRYSDFLGVCSDSSLDPSQGALIAKMLDDSGNVIVMGNSVCLRP 184
Query: 179 DMIAKAIGSMIPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGIDXXXXXQVRRELW 238
+ K+I ++P ID VRRELW
Sbjct: 185 HQLTKSIEGLLPLSQIHNPNDPRRKELNELEAIKTV----------IDQKAHSLVRRELW 234
Query: 239 CGLGLLAAQTLGFMRLTFWELSWDVMEPVCFYVTSLYFMSGYAFFMRTSTEPSFEGFYRS 298
GLG L QT GFMRLTFW+L+WDVMEP+CFYV+S+YFM+GY FF++TS EPSF+GFY+S
Sbjct: 235 AGLGYLIIQTAGFMRLTFWDLTWDVMEPICFYVSSVYFMAGYTFFLKTSREPSFQGFYQS 294
Query: 299 RLASRQRRLMRARSFDVARYEALKE 323
R ++QR+LM++ FDV RY+ LK+
Sbjct: 295 RFEAKQRKLMQSEDFDVGRYDELKK 319
>AT5G66650.1 | chr5:26603204-26604257 REVERSE LENGTH=322
Length = 321
Score = 164 bits (416), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 84/197 (42%), Positives = 111/197 (56%), Gaps = 11/197 (5%)
Query: 127 LRSNAQSVVSGSEFAALCVDIXXXXXXXXXXXXXXDDSGVVIVLGDAVFLRPDMIAKAIG 186
LR ++ V SEF +C + D++G VIVLG V L+P+ + A+
Sbjct: 124 LREIGKNWVPYSEFVRVCGEYSSDPEQGNRVANMLDEAGNVIVLGKLVCLKPEELTSAMA 183
Query: 187 SMIPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGIDXXXXXQVRRELWCGLGLLAA 246
+IP ID VR+ELW GLGL+ A
Sbjct: 184 GLIPTLEPSLDAETRQEFEQLEIIKS-----------DIDKRADDLVRKELWAGLGLIMA 232
Query: 247 QTLGFMRLTFWELSWDVMEPVCFYVTSLYFMSGYAFFMRTSTEPSFEGFYRSRLASRQRR 306
QT+GF RLTFWELSWDVMEP+CFYVTS YFM+GYAFF+RTS EPSFEGFY+SR ++Q+R
Sbjct: 233 QTVGFFRLTFWELSWDVMEPICFYVTSTYFMAGYAFFLRTSKEPSFEGFYKSRFETKQKR 292
Query: 307 LMRARSFDVARYEALKE 323
L++ FD+ R+ L++
Sbjct: 293 LIKMLDFDIDRFTKLQK 309
>AT5G42610.1 | chr5:17062507-17063934 FORWARD LENGTH=294
Length = 293
Score = 162 bits (411), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 84/196 (42%), Positives = 106/196 (54%), Gaps = 11/196 (5%)
Query: 127 LRSNAQSVVSGSEFAALCVDIXXXXXXXXXXXXXXDDSGVVIVLGDAVFLRPDMIAKAIG 186
LR +S VS EF +C + D SG V+VLGD VFL P IAK++
Sbjct: 95 LREIPKSSVSYWEFIQICCESCGNDEQGSQMAKSLDHSGCVVVLGDIVFLHPHQIAKSME 154
Query: 187 SMIPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGIDXXXXXQVRRELWCGLGLLAA 246
+MI ID V+ EL+CGLG LA
Sbjct: 155 AMIKQTSVLPNDPRKEELVQLATTKK-----------SIDIEARRIVQAELYCGLGFLAV 203
Query: 247 QTLGFMRLTFWELSWDVMEPVCFYVTSLYFMSGYAFFMRTSTEPSFEGFYRSRLASRQRR 306
QT+GFMRLTFWELSWDVMEP+CF+VT+++F+ GY FF+RTSTEPSFEG +R R ++Q++
Sbjct: 204 QTIGFMRLTFWELSWDVMEPICFFVTTIHFILGYIFFLRTSTEPSFEGLFRQRFKTKQKK 263
Query: 307 LMRARSFDVARYEALK 322
LM FD RY L
Sbjct: 264 LMERHGFDFLRYNELN 279
>AT1G09575.1 | chr1:3101851-3102832 REVERSE LENGTH=293
Length = 292
Score = 110 bits (276), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 56/161 (34%), Positives = 81/161 (50%), Gaps = 11/161 (6%)
Query: 162 DDSGVVIVLGDAVFLRPDMIAKAIGSMIPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 221
DD+GVV++ D V+L PD + I +P
Sbjct: 109 DDAGVVLIFRDKVYLHPDKVVDLIRRAMPLDQNPEEDQIKEEFNKLRIMKEE-------- 160
Query: 222 XXGIDXXXXXQVRRELWCGLGLLAAQTLGFMRLTFWELSWDVMEPVCFYVTSLYFMSGYA 281
ID QVR+ LWCGL Q F RLTFWE SWDVMEP+ F+ T+ + GYA
Sbjct: 161 ---IDVLAHRQVRKILWCGLATSMVQIGLFFRLTFWEFSWDVMEPITFFATATGIIVGYA 217
Query: 282 FFMRTSTEPSFEGFYRSRLASRQRRLMRARSFDVARYEALK 322
+F+ TS +P+++ F + SRQR+L+++ FD R++ L+
Sbjct: 218 YFLMTSRDPTYQDFMKRLFLSRQRKLLKSHKFDCERFKELE 258
>AT1G57610.1 | chr1:21337449-21338412 REVERSE LENGTH=294
Length = 293
Score = 108 bits (269), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 82/163 (50%), Gaps = 11/163 (6%)
Query: 162 DDSGVVIVLGDAVFLRPDMIAKAIGSMIPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 221
DD+GV+++ D V+L P + I +P
Sbjct: 105 DDAGVILIFRDKVYLHPHKVVDLIRKAVPLGLNPDDELIREEFDKMRSMKEE-------- 156
Query: 222 XXGIDXXXXXQVRRELWCGLGLLAAQTLGFMRLTFWELSWDVMEPVCFYVTSLYFMSGYA 281
ID QVR+ LW GLG Q F+RLTFWE SWDVMEP+ F+ T+ + GYA
Sbjct: 157 ---IDVLAHQQVRKILWGGLGYSVVQIGIFVRLTFWEFSWDVMEPITFFTTATGIIVGYA 213
Query: 282 FFMRTSTEPSFEGFYRSRLASRQRRLMRARSFDVARYEALKEQ 324
+F+ TS +P+++ F + SRQR+L+++ FD R++ L+ +
Sbjct: 214 YFLMTSRDPTYQDFMKRLFLSRQRKLLKSHKFDAERFKELENK 256
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.328 0.140 0.442
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,529,800
Number of extensions: 137956
Number of successful extensions: 286
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 286
Number of HSP's successfully gapped: 6
Length of query: 350
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 251
Effective length of database: 8,392,385
Effective search space: 2106488635
Effective search space used: 2106488635
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 112 (47.8 bits)