BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0230500 Os03g0230500|AK100971
(349 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G08170.2 | chr4:5163707-5167000 REVERSE LENGTH=354 384 e-107
AT4G33770.1 | chr4:16193589-16196242 REVERSE LENGTH=392 353 9e-98
AT5G16760.1 | chr5:5509890-5510849 FORWARD LENGTH=320 225 3e-59
AT2G43980.1 | chr2:18208437-18211604 REVERSE LENGTH=489 62 4e-10
>AT4G08170.2 | chr4:5163707-5167000 REVERSE LENGTH=354
Length = 353
Score = 384 bits (985), Expect = e-107, Method: Compositional matrix adjust.
Identities = 199/313 (63%), Positives = 240/313 (76%), Gaps = 1/313 (0%)
Query: 33 AVPVTR-LVVGYALTKKKVKSFLQPNLLLLARKKGINLVAIDDTRPLAEQGPFDVILHKI 91
A PV + ++VGYALT KK+KSFLQP L LAR KGI VAID +PL+EQGPFD++LHK
Sbjct: 34 AFPVKKSIIVGYALTSKKIKSFLQPKLEGLARNKGILFVAIDQNKPLSEQGPFDIVLHKQ 93
Query: 92 TSKEWQQVLEDYHEEHPEVTVLDPPNAINHLNNRQSMLAEVSDLNLSSFYGEVCTPRQLV 151
KEW+++LE++ HP+VTVLDPP+AI HL NRQSML V+D+NLS G V P+QLV
Sbjct: 94 IGKEWRRILEEFRLAHPDVTVLDPPDAILHLRNRQSMLQCVADMNLSDSNGRVGVPKQLV 153
Query: 152 IMRDPSSIPTAVAMAGLTLPLVAKPLVVDGTSKSHELSLAYDEASLSMLDPPLVLQEFVN 211
I +D SSIP AV AGL LPLVAKPLV DG++KSHELSLAYD+ SL L+PPLVLQEFVN
Sbjct: 154 IKKDASSIPEAVNNAGLRLPLVAKPLVADGSAKSHELSLAYDQHSLLKLEPPLVLQEFVN 213
Query: 212 HGGILFKVYIIGETIQVVRRFSLPDVNTYDLLNNVGVYRFPRVSCAAASADHADLDPHIS 271
HGG+LFKVYI+GE I+VVRRFSLPDV+ +L + GV+RFPRVSCAAASAD ADLDP I+
Sbjct: 214 HGGVLFKVYIVGEAIRVVRRFSLPDVSRRELPKSAGVFRFPRVSCAAASADDADLDPSIA 273
Query: 272 XXXXXXXXXXXXXXXXXXXXXXXFNIDMIRELGTKDRYYIIDINYFPGFGKMPGYEHIFT 331
FN+D+IRE GT+DR+Y+IDINYFPG+GKMP YEH+FT
Sbjct: 274 ELPPRPLLERLAKELRRGLGLRLFNLDIIREHGTRDRFYVIDINYFPGYGKMPEYEHVFT 333
Query: 332 DFLLNLAQSKYKK 344
DFLL++ QS+ KK
Sbjct: 334 DFLLSVVQSQCKK 346
>AT4G33770.1 | chr4:16193589-16196242 REVERSE LENGTH=392
Length = 391
Score = 353 bits (905), Expect = 9e-98, Method: Compositional matrix adjust.
Identities = 180/307 (58%), Positives = 229/307 (74%)
Query: 38 RLVVGYALTKKKVKSFLQPNLLLLARKKGINLVAIDDTRPLAEQGPFDVILHKITSKEWQ 97
+LVVGYALT KK KSFLQP L LLAR+KGI VAID RPL+EQGPFDV+LHK+ KEW+
Sbjct: 80 KLVVGYALTSKKKKSFLQPKLELLARRKGIFFVAIDLNRPLSEQGPFDVVLHKLLGKEWE 139
Query: 98 QVLEDYHEEHPEVTVLDPPNAINHLNNRQSMLAEVSDLNLSSFYGEVCTPRQLVIMRDPS 157
+V+EDY ++HPEVTVLDPP +I + NRQSML ++DL LS G + P+Q+V+++D +
Sbjct: 140 EVIEDYQQKHPEVTVLDPPGSIQRIYNRQSMLQGMADLKLSDCSGSLFVPKQMVVLKDSA 199
Query: 158 SIPTAVAMAGLTLPLVAKPLVVDGTSKSHELSLAYDEASLSMLDPPLVLQEFVNHGGILF 217
+ AV AGL PLVAKPL +DGT+KSH+L LAYD SL+ LDPPLVLQEFVNHGG++F
Sbjct: 200 ASADAVVEAGLKFPLVAKPLWIDGTAKSHQLYLAYDRRSLAELDPPLVLQEFVNHGGVMF 259
Query: 218 KVYIIGETIQVVRRFSLPDVNTYDLLNNVGVYRFPRVSCAAASADHADLDPHISXXXXXX 277
KV+++G+ I+V+RRFSLP+V+ + GV++FPRVS AAASAD+ADLDP ++
Sbjct: 260 KVFVVGDVIKVMRRFSLPNVSNCEKAKVDGVFQFPRVSSAAASADNADLDPRVAELPPKP 319
Query: 278 XXXXXXXXXXXXXXXXXFNIDMIRELGTKDRYYIIDINYFPGFGKMPGYEHIFTDFLLNL 337
FNIDMIRE G+K+ +Y+IDINYFPG+GK+P YE +F DF NL
Sbjct: 320 FLEALVKELRSLLGLRLFNIDMIREHGSKNVFYVIDINYFPGYGKLPDYEQVFVDFFQNL 379
Query: 338 AQSKYKK 344
AQ KYKK
Sbjct: 380 AQVKYKK 386
>AT5G16760.1 | chr5:5509890-5510849 FORWARD LENGTH=320
Length = 319
Score = 225 bits (573), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 121/313 (38%), Positives = 179/313 (57%), Gaps = 13/313 (4%)
Query: 38 RLVVGYALTKKKVKSFLQPNLLLLARKKGINLVAIDDTRPLAEQGPFDVILHKITSKEWQ 97
R +VGYAL KK SF+QP+L+ +R++GI+LV +D T+ L EQG D I+HK+ W+
Sbjct: 8 RYLVGYALAAKKQHSFIQPSLIEHSRQRGIDLVKLDPTKSLLEQGKLDCIIHKLYDVYWK 67
Query: 98 QVLEDYHEEHPEVTVLDPPNAINHLNNRQSMLAEVSDLNL----SSFYGEVCTPRQLVIM 153
+ L ++ E+ P V V+D P AI L+NR SML ++ L S +G P Q+V+M
Sbjct: 68 ENLHEFREKCPGVPVIDLPEAIERLHNRVSMLEVITQLRFPVSDSERFG---VPEQVVVM 124
Query: 154 RDPSSIPTAVAMAGLTLPLVAKPLVVDGTSKSHELSLAYDEASLSMLDPPLVLQEFVNHG 213
D S + A+ L P++AKPL DG++KSH++ L YD+ + +L P+VLQEFVNHG
Sbjct: 125 -DSSVLSGGGALGELKFPVIAKPLDADGSAKSHKMFLIYDQEGMKILKAPIVLQEFVNHG 183
Query: 214 GILFKVYIIGETIQVVRRFSLPDVNTYDLLNNVGVYRFPRVSCAAASADH-----ADLDP 268
G++FKVY++G+ ++ V+R SLPD++ + + G F ++S A D D
Sbjct: 184 GVIFKVYVVGDHVKCVKRRSLPDISEEKIGTSKGSLPFSQISNLTAQEDKNIEYGEDRSL 243
Query: 269 HISXXXXXXXXXXXXXXXXXXXXXXXFNIDMIRELGTKDRYYIIDINYFPGFGKMPGYEH 328
FN D+IR+ +RY IIDINYFPG+ KMP YE
Sbjct: 244 EKVEMPPLSFLTDLAKAMRESMGLNLFNFDVIRDAKDANRYLIIDINYFPGYAKMPSYEP 303
Query: 329 IFTDFLLNLAQSK 341
+ T+F ++ K
Sbjct: 304 VLTEFFWDMVTKK 316
>AT2G43980.1 | chr2:18208437-18211604 REVERSE LENGTH=489
Length = 488
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 71/325 (21%), Positives = 130/325 (40%), Gaps = 34/325 (10%)
Query: 29 LNGGAVPVTRLVVGYALTKKKVKSFLQPNLL-LLARKKGINLVAIDDTRPLAEQ-GPFDV 86
+N A+ +V Y + +V+ F + L + G+ + + PLA Q D+
Sbjct: 145 INKKAMGDGAAIVAYIMKPSRVEDFAKRGALPMYPTSCGLIFLPLMFEFPLASQLKHADI 204
Query: 87 ILHK--------------------ITSKEWQQVLEDYHEEHPEVTVLDPPNAINHLNNRQ 126
I HK +T + L+ Y E+ ++DP I + +R
Sbjct: 205 IFHKATDEILSIELNCSDSKSSVAVTFSTGMEKLKKYMEDQNACAIVDPIRNIYPVVDRL 264
Query: 127 SMLAEVSDLNLSSFYGEVCTPRQLVIMR----DPSSIPTAVAMAGLTLPLVAKPLVVDGT 182
M + L L R ++ D + ++ AGL+LP + KP V G
Sbjct: 265 KMQHIL--LGLEGLGAAGRKIRGACFLKIDSYDEPDLAQNLSRAGLSLPCIVKPQVACGV 322
Query: 183 SKSHELSLAYDEASLSMLDPPL--VLQEFVNHGGILFKVYIIGETIQVVRRFSLPDVNTY 240
+ +H +++ + L+ P+ ++QE+V+H +FK Y++GETI + S+P ++
Sbjct: 323 ADAHSMAIVFRVEDFKNLNTPVPAIIQEYVDHSSRIFKFYVLGETIFHAVKKSIPSSSSL 382
Query: 241 -DLLNNVGVYRFPRVSCAAASADHADLDPHISXXXXXXXXXXXXXXXXXXXXXXXFNIDM 299
G+ S + D A+ +P F D+
Sbjct: 383 RKSAEENGLKPILFDSLKSLPVDSANQNP--VSEIDLELVTEAATWLRKKLDLTIFGFDV 440
Query: 300 IRELGTKDRYYIIDINYFPGFGKMP 324
+ + GT D + I+D+NY P F ++P
Sbjct: 441 VIQEGTGD-HVIVDLNYLPSFKEVP 464
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.138 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,958,701
Number of extensions: 267953
Number of successful extensions: 604
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 601
Number of HSP's successfully gapped: 5
Length of query: 349
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 250
Effective length of database: 8,392,385
Effective search space: 2098096250
Effective search space used: 2098096250
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 112 (47.8 bits)