BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0228400 Os03g0228400|AK103703
(166 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G50860.1 | chr3:18902346-18903959 FORWARD LENGTH=167 244 2e-65
AT2G17380.1 | chr2:7553122-7554887 FORWARD LENGTH=162 112 1e-25
AT4G35410.2 | chr4:16832572-16833796 FORWARD LENGTH=163 112 1e-25
AT1G47830.1 | chr1:17613346-17614784 REVERSE LENGTH=143 105 1e-23
AT2G19790.1 | chr2:8527302-8528395 FORWARD LENGTH=144 101 2e-22
>AT3G50860.1 | chr3:18902346-18903959 FORWARD LENGTH=167
Length = 166
Score = 244 bits (623), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 107/166 (64%), Positives = 143/166 (86%)
Query: 1 MIQAVMVMSTQGKPRLLKFYSYQPPEKHQDLVRGVFQLLSARPDSVSNFVKVDAIFGPGA 60
MI+AVM+M+TQGKPRL KFY Y P EK Q+L+RGVF +L +RP++VSNF++++++FGP +
Sbjct: 1 MIKAVMMMNTQGKPRLAKFYDYLPVEKQQELIRGVFSVLCSRPENVSNFLEIESLFGPDS 60
Query: 61 KLVYKHLATLYFVFVFDSSENELAVLDLVQVFVETLDRCFKNVCELDIVFNFNKLHTILD 120
+LVYKH ATLYFV VFD SENELA+LDL+QV VETLD+CF NVCELDIVFN++K+H +LD
Sbjct: 61 RLVYKHYATLYFVLVFDGSENELAMLDLIQVLVETLDKCFSNVCELDIVFNYSKMHAVLD 120
Query: 121 EMILGGQVIETSSEQIMRSVEEIARLEKQSNTTSLIPKSISERFSR 166
E++ GGQV+ETSS ++M++VEEI++LE SN+ SL+PKS+S R
Sbjct: 121 EIVFGGQVLETSSAEVMKAVEEISKLEAASNSISLVPKSVSGWRGR 166
>AT2G17380.1 | chr2:7553122-7554887 FORWARD LENGTH=162
Length = 161
Score = 112 bits (280), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 104/165 (63%), Gaps = 12/165 (7%)
Query: 1 MIQAVMVMSTQGKPRLLKFYSYQPPEKHQDLVRGVFQLLSARPDSVSNFVKVDAIFGPGA 60
MI V+++S QGK RL K+YS ++ ++R + ++ R + NF++ G
Sbjct: 1 MIHFVLLVSRQGKVRLTKWYSPYTQKERSKVIRELSGVILNRGPKLCNFIE-----WRGY 55
Query: 61 KLVYKHLATLYFVFVFDSSENELAVLDLVQVFVETLDRCFKNVCELDIVFNFNKLHTILD 120
K+VYK A+LYF D ++NEL VL+++ +VE LDR F +VCELD++FNF+K + ILD
Sbjct: 56 KVVYKRYASLYFCMCIDEADNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILD 115
Query: 121 EMILGGQVIETSSEQIMRSVE------EIARLEKQSNTTSLIPKS 159
E+++ G++ E+S + + R + E+A+ E+ S+ +++I ++
Sbjct: 116 ELLIAGELQESSKKTVARIISAQDQLVEVAK-EEASSISNIIAQA 159
>AT4G35410.2 | chr4:16832572-16833796 FORWARD LENGTH=163
Length = 162
Score = 112 bits (280), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 60/165 (36%), Positives = 103/165 (62%), Gaps = 12/165 (7%)
Query: 1 MIQAVMVMSTQGKPRLLKFYSYQPPEKHQDLVRGVFQLLSARPDSVSNFVKVDAIFGPGA 60
MI V+++S QGK RL K+YS ++ ++R + ++ R + NFV+ G
Sbjct: 1 MIHFVLLVSRQGKVRLTKWYSPYAQKERSKVIRELSGVILNRGPKLCNFVE-----WRGY 55
Query: 61 KLVYKHLATLYFVFVFDSSENELAVLDLVQVFVETLDRCFKNVCELDIVFNFNKLHTILD 120
K+VYK A+LYF D +NEL VL+++ +VE LDR F +VCELD++FNF+K + ILD
Sbjct: 56 KVVYKRYASLYFCMCIDQEDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILD 115
Query: 121 EMILGGQVIETSSEQIMRSVE------EIARLEKQSNTTSLIPKS 159
E+++ G++ E+S + + R + E+A+ E+ S+ +++I ++
Sbjct: 116 ELLIAGELQESSKKTVARIISAQDQLVEVAK-EEASSISNIIAQA 159
>AT1G47830.1 | chr1:17613346-17614784 REVERSE LENGTH=143
Length = 142
Score = 105 bits (262), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 59/148 (39%), Positives = 92/148 (62%), Gaps = 7/148 (4%)
Query: 1 MIQAVMVMSTQGKPRLLKFY-SYQPPEKHQDLVRGVFQLLSARPDSVSNFVKVDAIFGPG 59
MI+ +++ + QGK RL K+Y + EKH+ + V +L+ R +NFV+
Sbjct: 1 MIRFILLQNRQGKTRLAKYYVPLEESEKHK-VEYEVHRLVVNRDAKFTNFVEFRT----- 54
Query: 60 AKLVYKHLATLYFVFVFDSSENELAVLDLVQVFVETLDRCFKNVCELDIVFNFNKLHTIL 119
K++Y+ A L+F D ++NELA L+ + +FVE LD F NVCELD+VFNF+K++ IL
Sbjct: 55 HKVIYRRYAGLFFSVCVDITDNELAYLESIHLFVEILDHFFSNVCELDLVFNFHKVYLIL 114
Query: 120 DEMILGGQVIETSSEQIMRSVEEIARLE 147
DE IL G++ ETS I+ + E+ +L+
Sbjct: 115 DEFILAGELQETSKRAIIERMSELEKLQ 142
>AT2G19790.1 | chr2:8527302-8528395 FORWARD LENGTH=144
Length = 143
Score = 101 bits (251), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 87/140 (62%), Gaps = 5/140 (3%)
Query: 2 IQAVMVMSTQGKPRLLKFYSYQPPEKHQDLVRGVFQLLSARPDSVSNFVKVDAIFGPGAK 61
I+ +++++ QG+ RL ++Y + E+ + L + + AR D +FV+ K
Sbjct: 3 IRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARNDQQCSFVE-----HRNYK 57
Query: 62 LVYKHLATLYFVFVFDSSENELAVLDLVQVFVETLDRCFKNVCELDIVFNFNKLHTILDE 121
+VY+ A+L+F+ D ENELA+L+ + + VET+D+ F NVCELDI+F+ K H +L+E
Sbjct: 58 IVYRRYASLFFMVGVDDDENELAILEFIHLLVETMDKHFGNVCELDIMFHLEKAHFMLEE 117
Query: 122 MILGGQVIETSSEQIMRSVE 141
M++ G ++ETS I+ ++
Sbjct: 118 MVMNGCIVETSKANILSPIQ 137
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.323 0.137 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,189,652
Number of extensions: 114956
Number of successful extensions: 345
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 341
Number of HSP's successfully gapped: 7
Length of query: 166
Length of database: 11,106,569
Length adjustment: 91
Effective length of query: 75
Effective length of database: 8,611,713
Effective search space: 645878475
Effective search space used: 645878475
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 108 (46.2 bits)